Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIDIIJKE_11 | 119745 | 120377 | ErmG | ARO:3000522 | ErmG | 99.52 | 86.07 | L42817.1 |
| JIDIIJKE_77 | 103771 | 105696 | tet(Q) | ARO:3000191 | tet(Q) | 97.35 | 97.56 | Z21523.1 |
| JIDIIJKE_35 | 7731 | 8696 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIDIIJKE_11 | 119745 | 120479 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 100.00 | M15332 |
| JIDIIJKE_35 | 7731 | 8696 | cfxA3 | Ampicillin | 98.55 | 100.00 | AF472622 |
| JIDIIJKE_35 | 7731 | 8696 | cfxA4 | Unknown Beta-lactam | 98.55 | 100.00 | AY769933 |
| JIDIIJKE_35 | 7731 | 8696 | cfxA5 | Unknown Beta-lactam | 98.55 | 100.00 | AY769934 |
| JIDIIJKE_35 | 7731 | 8696 | cfxA | Cefoxitin, Ampicillin | 98.55 | 100.00 | U38243 |
| JIDIIJKE_11 | 117510 | 118973 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| JIDIIJKE_77 | 103771 | 105696 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.04 | 100.00 | L33696 |
| JIDIIJKE_11 | 116170 | 117384 | mef(A) | Erythromycin, Azithromycin | 94.40 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIDIIJKE_35 | 7731 | 8693 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| JIDIIJKE_11 | 119745 | 120476 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | INTERNAL_STOP | 99.18 | 100.00 | WP_063844791.1 |
| JIDIIJKE_11 | 116170 | 117393 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.04 | 100.00 | WP_012102963.1 |
| JIDIIJKE_77 | 103771 | 105693 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.35 | 100.00 | WP_002560998.1 |
| JIDIIJKE_11 | 117510 | 118970 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JIDIIJKE_82 | 2018 | 2697 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIDIIJKE_1 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_2 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_3 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_4 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_5 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_6 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_7 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_8 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_9 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_10 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_11 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_12 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_13 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_14 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_15 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_16 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_17 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_18 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_19 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_20 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_21 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_22 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_23 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_24 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_25 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_26 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_27 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_28 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_29 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_30 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_31 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_32 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_33 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_34 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_35 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_36 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_37 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_38 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_39 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_40 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_41 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_42 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_43 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_44 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_45 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_46 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_47 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_48 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_49 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_50 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_51 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_52 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_53 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_54 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_55 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_56 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_57 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_58 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_59 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_60 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_61 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_62 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_63 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_64 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_65 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_66 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_67 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_68 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_69 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_70 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_71 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_72 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_73 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_74 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_75 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_76 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_77 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_78 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_79 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_80 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_81 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_82 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_83 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_84 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_85 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_86 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_87 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_88 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_89 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_90 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_91 | 1.0 | 0.0 | 1.0 |
| JIDIIJKE_92 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_93 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_94 | 0.0 | 1.0 | 0.0 |
| JIDIIJKE_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIDIIJKE_5 | 19206 | 29283 | False | Unknown | VOG4572, |
| JIDIIJKE_10 | 61320 | 62479 | False | Myoviridae | VOG0982, |
| JIDIIJKE_21 | 44227 | 56218 | False | Unknown | VOG0572, |
| JIDIIJKE_36 | 23958 | 34424 | False | Siphoviridae | VOG6280, |
| JIDIIJKE_55 | 189457 | 197642 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)