Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKMJODOI_11 | 492447 | 493652 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| EKMJODOI_22 | 50965 | 52890 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| EKMJODOI_27 | 14999 | 15838 | ErmF | ARO:3000498 | ErmF | 99.62 | 104.89 | M17124.1 |
| EKMJODOI_27 | 13620 | 14786 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EKMJODOI_27 | 14999 | 15799 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| EKMJODOI_27 | 13620 | 14786 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| EKMJODOI_22 | 50965 | 52890 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKMJODOI_27 | 15002 | 15799 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| EKMJODOI_11 | 491913 | 492422 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| EKMJODOI_27 | 13620 | 14783 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| EKMJODOI_22 | 50968 | 52890 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| EKMJODOI_11 | 492450 | 493652 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EKMJODOI_42 | 886 | 1565 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKMJODOI_1 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_2 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_3 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_4 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_5 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_6 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_7 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_8 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_9 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_10 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_11 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_12 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_13 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_14 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_15 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_16 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_17 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_18 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_19 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_20 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_21 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_22 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_23 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_24 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_25 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_26 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_27 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_28 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_29 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_30 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_31 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_32 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_33 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_34 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_35 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_37 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_38 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_39 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_40 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_41 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_42 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_43 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_44 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_45 | 1.0 | 0.0 | 1.0 |
| EKMJODOI_46 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_47 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_48 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_49 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_50 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_51 | 0.0 | 1.0 | 0.0 |
| EKMJODOI_52 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EKMJODOI_11 | 255468 | 263653 | False | Unknown | VOG4573, |
| EKMJODOI_51 | 169741 | 181292 | False | Unknown | VOG5562, |
| EKMJODOI_51 | 212966 | 224597 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)