Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DOALENPA_78 | 53664 | 54629 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| DOALENPA_36 | 71 | 1732 | tet(Q) | ARO:3000191 | tet(Q) | 95.84 | 84.17 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DOALENPA_78 | 53664 | 54629 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DOALENPA_78 | 53664 | 54629 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DOALENPA_78 | 53664 | 54629 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DOALENPA_78 | 53664 | 54629 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| DOALENPA_36 | 71 | 1733 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.82 | 86.34 | L33696 |
| DOALENPA_19 | 2446 | 3155 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.44 | 88.64 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DOALENPA_78 | 53664 | 54626 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DOALENPA_36 | 74 | 1732 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.46 | 86.27 | WP_063856407.1 |
| DOALENPA_19 | 2449 | 3171 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 96.68 | 90.60 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DOALENPA_27 | 623 | 1302 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DOALENPA_1 | 0.0 | 1.0 | 0.0 |
| DOALENPA_2 | 0.0 | 1.0 | 0.0 |
| DOALENPA_3 | 1.0 | 0.0 | 1.0 |
| DOALENPA_4 | 1.0 | 0.0 | 1.0 |
| DOALENPA_5 | 0.0 | 1.0 | 0.0 |
| DOALENPA_6 | 0.0 | 1.0 | 0.0 |
| DOALENPA_7 | 1.0 | 0.0 | 1.0 |
| DOALENPA_8 | 0.0 | 1.0 | 0.0 |
| DOALENPA_9 | 1.0 | 0.0 | 1.0 |
| DOALENPA_10 | 1.0 | 0.0 | 1.0 |
| DOALENPA_11 | 0.0 | 1.0 | 0.0 |
| DOALENPA_13 | 1.0 | 0.0 | 1.0 |
| DOALENPA_14 | 1.0 | 0.0 | 1.0 |
| DOALENPA_15 | 1.0 | 0.0 | 1.0 |
| DOALENPA_16 | 0.0 | 1.0 | 0.0 |
| DOALENPA_17 | 0.0 | 1.0 | 0.0 |
| DOALENPA_18 | 0.0 | 1.0 | 0.0 |
| DOALENPA_19 | 0.0 | 1.0 | 0.0 |
| DOALENPA_20 | 0.0 | 1.0 | 0.0 |
| DOALENPA_21 | 1.0 | 0.0 | 1.0 |
| DOALENPA_22 | 0.0 | 1.0 | 0.0 |
| DOALENPA_23 | 0.0 | 1.0 | 0.0 |
| DOALENPA_24 | 1.0 | 0.0 | 1.0 |
| DOALENPA_25 | 1.0 | 0.0 | 1.0 |
| DOALENPA_26 | 0.0 | 1.0 | 0.0 |
| DOALENPA_27 | 1.0 | 0.0 | 1.0 |
| DOALENPA_28 | 1.0 | 0.0 | 1.0 |
| DOALENPA_29 | 1.0 | 0.0 | 1.0 |
| DOALENPA_30 | 1.0 | 0.0 | 1.0 |
| DOALENPA_31 | 0.0 | 1.0 | 0.0 |
| DOALENPA_32 | 0.0 | 1.0 | 0.0 |
| DOALENPA_33 | 0.0 | 1.0 | 0.0 |
| DOALENPA_35 | 0.0 | 1.0 | 0.0 |
| DOALENPA_36 | 1.0 | 0.0 | 1.0 |
| DOALENPA_37 | 1.0 | 0.0 | 1.0 |
| DOALENPA_38 | 1.0 | 0.0 | 1.0 |
| DOALENPA_39 | 1.0 | 0.0 | 1.0 |
| DOALENPA_40 | 0.0 | 1.0 | 0.0 |
| DOALENPA_41 | 0.0 | 1.0 | 0.0 |
| DOALENPA_42 | 1.0 | 0.0 | 1.0 |
| DOALENPA_43 | 1.0 | 0.0 | 1.0 |
| DOALENPA_44 | 0.0 | 1.0 | 0.0 |
| DOALENPA_45 | 1.0 | 0.0 | 1.0 |
| DOALENPA_46 | 1.0 | 0.0 | 1.0 |
| DOALENPA_47 | 1.0 | 0.0 | 1.0 |
| DOALENPA_48 | 0.0 | 1.0 | 0.0 |
| DOALENPA_49 | 1.0 | 0.0 | 1.0 |
| DOALENPA_50 | 1.0 | 0.0 | 1.0 |
| DOALENPA_51 | 0.0 | 1.0 | 0.0 |
| DOALENPA_52 | 0.0 | 1.0 | 0.0 |
| DOALENPA_53 | 0.0 | 1.0 | 0.0 |
| DOALENPA_54 | 0.0 | 1.0 | 0.0 |
| DOALENPA_55 | 0.0 | 1.0 | 0.0 |
| DOALENPA_56 | 0.0 | 1.0 | 0.0 |
| DOALENPA_57 | 0.0 | 1.0 | 0.0 |
| DOALENPA_58 | 0.0 | 1.0 | 0.0 |
| DOALENPA_59 | 0.0 | 1.0 | 0.0 |
| DOALENPA_60 | 0.0 | 1.0 | 0.0 |
| DOALENPA_61 | 0.0 | 1.0 | 0.0 |
| DOALENPA_62 | 0.0 | 1.0 | 0.0 |
| DOALENPA_63 | 0.0 | 1.0 | 0.0 |
| DOALENPA_64 | 0.0 | 1.0 | 0.0 |
| DOALENPA_65 | 0.0 | 1.0 | 0.0 |
| DOALENPA_66 | 0.0 | 1.0 | 0.0 |
| DOALENPA_67 | 0.0 | 1.0 | 0.0 |
| DOALENPA_68 | 0.0 | 1.0 | 0.0 |
| DOALENPA_69 | 0.0 | 1.0 | 0.0 |
| DOALENPA_70 | 0.0 | 1.0 | 0.0 |
| DOALENPA_71 | 0.0 | 1.0 | 0.0 |
| DOALENPA_72 | 0.0 | 1.0 | 0.0 |
| DOALENPA_73 | 0.0 | 1.0 | 0.0 |
| DOALENPA_74 | 0.0 | 1.0 | 0.0 |
| DOALENPA_75 | 1.0 | 0.0 | 1.0 |
| DOALENPA_76 | 0.0 | 1.0 | 0.0 |
| DOALENPA_77 | 0.0 | 1.0 | 0.0 |
| DOALENPA_78 | 0.0 | 1.0 | 0.0 |
| DOALENPA_79 | 0.0 | 1.0 | 0.0 |
| DOALENPA_80 | 0.0 | 1.0 | 0.0 |
| DOALENPA_81 | 0.0 | 1.0 | 0.0 |
| DOALENPA_82 | 0.0 | 1.0 | 0.0 |
| DOALENPA_83 | 0.0 | 1.0 | 0.0 |
| DOALENPA_84 | 0.0 | 1.0 | 0.0 |
| DOALENPA_85 | 0.0 | 1.0 | 0.0 |
| DOALENPA_86 | 0.0 | 1.0 | 0.0 |
| DOALENPA_87 | 0.0 | 1.0 | 0.0 |
| DOALENPA_88 | 0.0 | 1.0 | 0.0 |
| DOALENPA_89 | 0.0 | 1.0 | 0.0 |
| DOALENPA_90 | 0.0 | 1.0 | 0.0 |
| DOALENPA_91 | 0.0 | 1.0 | 0.0 |
| DOALENPA_92 | 0.0 | 1.0 | 0.0 |
| DOALENPA_93 | 0.0 | 1.0 | 0.0 |
| DOALENPA_94 | 0.0 | 1.0 | 0.0 |
| DOALENPA_95 | 0.0 | 1.0 | 0.0 |
| DOALENPA_96 | 0.0 | 1.0 | 0.0 |
| DOALENPA_97 | 0.0 | 1.0 | 0.0 |
| DOALENPA_98 | 0.0 | 1.0 | 0.0 |
| DOALENPA_99 | 0.0 | 1.0 | 0.0 |
| DOALENPA_100 | 1.0 | 0.0 | 1.0 |
| DOALENPA_101 | 0.0 | 1.0 | 0.0 |
| DOALENPA_102 | 0.0 | 1.0 | 0.0 |
| DOALENPA_103 | 0.0 | 1.0 | 0.0 |
| DOALENPA_104 | 1.0 | 0.0 | 1.0 |
| DOALENPA_105 | 0.0 | 1.0 | 0.0 |
| DOALENPA_106 | 0.0 | 1.0 | 0.0 |
| DOALENPA_107 | 0.0 | 1.0 | 0.0 |
| DOALENPA_108 | 1.0 | 0.0 | 1.0 |
| DOALENPA_109 | 0.0 | 1.0 | 0.0 |
| DOALENPA_110 | 1.0 | 0.0 | 1.0 |
| DOALENPA_111 | 1.0 | 0.0 | 1.0 |
| DOALENPA_112 | 0.0 | 1.0 | 0.0 |
| DOALENPA_113 | 0.0 | 1.0 | 0.0 |
| DOALENPA_114 | 0.0 | 1.0 | 0.0 |
| DOALENPA_115 | 0.0 | 1.0 | 0.0 |
| DOALENPA_116 | 0.0 | 1.0 | 0.0 |
| DOALENPA_117 | 0.0 | 1.0 | 0.0 |
| DOALENPA_118 | 0.0 | 1.0 | 0.0 |
| DOALENPA_119 | 0.0 | 1.0 | 0.0 |
| DOALENPA_120 | 0.0 | 1.0 | 0.0 |
| DOALENPA_121 | 0.0 | 1.0 | 0.0 |
| DOALENPA_122 | 0.0 | 1.0 | 0.0 |
| DOALENPA_123 | 0.0 | 1.0 | 0.0 |
| DOALENPA_124 | 0.0 | 1.0 | 0.0 |
| DOALENPA_125 | 1.0 | 0.0 | 1.0 |
| DOALENPA_126 | 0.0 | 1.0 | 0.0 |
| DOALENPA_127 | 0.0 | 1.0 | 0.0 |
| DOALENPA_128 | 0.0 | 1.0 | 0.0 |
| DOALENPA_129 | 0.0 | 1.0 | 0.0 |
| DOALENPA_130 | 0.0 | 1.0 | 0.0 |
| DOALENPA_131 | 0.0 | 1.0 | 0.0 |
| DOALENPA_132 | 0.0 | 1.0 | 0.0 |
| DOALENPA_133 | 0.0 | 1.0 | 0.0 |
| DOALENPA_134 | 0.0 | 1.0 | 0.0 |
| DOALENPA_135 | 0.0 | 1.0 | 0.0 |
| DOALENPA_136 | 0.0 | 1.0 | 0.0 |
| DOALENPA_137 | 0.0 | 1.0 | 0.0 |
| DOALENPA_138 | 0.0 | 1.0 | 0.0 |
| DOALENPA_139 | 0.0 | 1.0 | 0.0 |
| DOALENPA_140 | 0.0 | 1.0 | 0.0 |
| DOALENPA_141 | 0.0 | 1.0 | 0.0 |
| DOALENPA_142 | 0.0 | 1.0 | 0.0 |
| DOALENPA_143 | 0.0 | 1.0 | 0.0 |
| DOALENPA_144 | 0.0 | 1.0 | 0.0 |
| DOALENPA_145 | 0.0 | 1.0 | 0.0 |
| DOALENPA_146 | 0.0 | 1.0 | 0.0 |
| DOALENPA_147 | 0.0 | 1.0 | 0.0 |
| DOALENPA_148 | 0.0 | 1.0 | 0.0 |
| DOALENPA_149 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DOALENPA_57 | 102662 | 107437 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)