Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAMGHGEM_93 | 50778 | 51743 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| DAMGHGEM_6 | 10249 | 12174 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| DAMGHGEM_63 | 9858 | 10592 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| DAMGHGEM_18 | 5558 | 7531 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DAMGHGEM_93 | 50778 | 51743 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| DAMGHGEM_18 | 5558 | 7483 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| DAMGHGEM_63 | 9858 | 10592 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| DAMGHGEM_63 | 7623 | 9086 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| DAMGHGEM_63 | 6283 | 7497 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAMGHGEM_93 | 50781 | 51743 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| DAMGHGEM_63 | 9858 | 10589 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| DAMGHGEM_18 | 5561 | 7483 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| DAMGHGEM_63 | 7623 | 9083 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| DAMGHGEM_63 | 6283 | 7506 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| DAMGHGEM_6 | 10252 | 12174 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DAMGHGEM_40 | 631 | 1211 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DAMGHGEM_1 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_2 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_3 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_4 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_5 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_6 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_7 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_8 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_9 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_10 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_11 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_12 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_13 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_14 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_15 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_16 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_17 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_18 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_19 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_20 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_21 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_22 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_23 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_24 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_25 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_27 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_28 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_29 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_30 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_31 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_32 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_33 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_34 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_35 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_36 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_37 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_38 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_39 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_40 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_41 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_42 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_43 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_44 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_45 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_46 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_47 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_48 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_49 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_50 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_51 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_52 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_53 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_54 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_55 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_56 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_57 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_58 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_59 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_60 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_61 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_62 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_63 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_64 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_65 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_66 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_67 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_68 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_69 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_70 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_71 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_72 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_73 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_74 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_75 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_76 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_77 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_78 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_79 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_80 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_81 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_82 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_83 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_84 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_85 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_86 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_87 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_88 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_89 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_90 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_91 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_92 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_93 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_94 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_95 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_96 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_97 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_98 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_99 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_100 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_101 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_102 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_103 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_104 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_105 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_106 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_107 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_108 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_109 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_110 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_111 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_112 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_113 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_114 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_115 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_116 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_117 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_118 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_119 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_120 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_121 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_122 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_123 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_124 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_125 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_126 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_127 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_128 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_129 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_130 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_131 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_132 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_133 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_134 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_135 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_136 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_137 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_138 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_139 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_140 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_141 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_142 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_143 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_144 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_145 | 1.0 | 0.0 | 1.0 |
| DAMGHGEM_146 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_147 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_148 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_149 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_150 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_151 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_152 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_153 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_154 | 0.0 | 1.0 | 0.0 |
| DAMGHGEM_155 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DAMGHGEM_33 | 38048 | 46464 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)