Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABMAGPMG_1 | 173140 | 175065 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| ABMAGPMG_12 | 56937 | 57902 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| ABMAGPMG_9 | 26735 | 28660 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| ABMAGPMG_89 | 10334 | 11068 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| ABMAGPMG_42 | 1170 | 3095 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| ABMAGPMG_42 | 83 | 883 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ABMAGPMG_12 | 56937 | 57902 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| ABMAGPMG_1 | 173140 | 175065 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
| ABMAGPMG_42 | 83 | 883 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| ABMAGPMG_89 | 10334 | 11068 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| ABMAGPMG_89 | 4845 | 6308 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| ABMAGPMG_89 | 3505 | 4719 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABMAGPMG_12 | 56937 | 57899 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| ABMAGPMG_89 | 10334 | 11065 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| ABMAGPMG_1 | 173143 | 175065 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| ABMAGPMG_42 | 83 | 880 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| ABMAGPMG_9 | 26738 | 28660 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
| ABMAGPMG_89 | 4845 | 6305 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| ABMAGPMG_89 | 3505 | 4728 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| ABMAGPMG_42 | 1170 | 3092 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ABMAGPMG_73 | 78 | 554 | repUS2 | 478 / 681 | 99.37 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABMAGPMG_1 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_2 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_3 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_4 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_5 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_6 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_7 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_8 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_9 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_10 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_11 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_12 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_13 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_14 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_15 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_16 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_17 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_18 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_19 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_20 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_21 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_22 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_23 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_24 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_25 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_26 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_27 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_28 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_29 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_30 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_31 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_32 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_33 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_34 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_35 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_36 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_37 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_38 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_39 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_40 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_41 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_42 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_43 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_44 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_45 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_46 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_47 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_48 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_49 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_50 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_51 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_52 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_53 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_54 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_55 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_56 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_57 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_58 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_59 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_60 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_61 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_62 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_63 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_64 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_65 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_66 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_67 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_68 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_69 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_70 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_71 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_72 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_73 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_74 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_75 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_76 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_77 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_78 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_79 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_81 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_82 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_84 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_85 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_86 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_87 | 1.0 | 0.0 | 1.0 |
| ABMAGPMG_88 | 0.0 | 1.0 | 0.0 |
| ABMAGPMG_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABMAGPMG_1 | 33075 | 37794 | False | Siphoviridae | VOG2703, |
Phigaro v2.4.0 (Database: Jan. 2024 release)