Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPCIIPHD_33 | 257017 | 258222 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPCIIPHD_33 | 258247 | 258756 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PPCIIPHD_33 | 257017 | 258219 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PPCIIPHD_72 | 992 | 1572 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPCIIPHD_1 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_2 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_3 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_4 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_5 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_6 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_7 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_8 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_9 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_10 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_11 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_12 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_13 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_14 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_15 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_16 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_17 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_18 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_19 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_20 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_21 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_22 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_23 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_24 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_25 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_26 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_27 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_28 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_29 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_30 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_31 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_32 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_33 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_34 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_35 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_36 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_37 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_38 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_39 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_40 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_41 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_42 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_43 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_44 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_45 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_46 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_47 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_48 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_49 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_50 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_51 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_52 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_53 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_54 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_55 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_56 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_57 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_58 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_59 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_60 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_61 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_62 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_63 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_64 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_65 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_66 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_67 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_68 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_69 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_71 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_72 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_73 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_74 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_75 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_76 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_77 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_78 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_79 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_80 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_81 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_82 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_83 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_84 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_85 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_86 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_87 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_88 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_89 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_90 | 0.0 | 1.0 | 0.0 |
| PPCIIPHD_91 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_92 | 1.0 | 0.0 | 1.0 |
| PPCIIPHD_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)