Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAHLKLKM_30 | 8665 | 9528 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| GAHLKLKM_30 | 7353 | 8489 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| GAHLKLKM_30 | 6015 | 7154 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| GAHLKLKM_30 | 4909 | 5709 | ErmF | ARO:3000498 | ErmF | 97.37 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GAHLKLKM_30 | 7323 | 8489 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| GAHLKLKM_30 | 4909 | 5709 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAHLKLKM_30 | 8665 | 9525 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| GAHLKLKM_30 | 7323 | 8486 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| GAHLKLKM_30 | 6015 | 7151 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| GAHLKLKM_30 | 4912 | 5709 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GAHLKLKM_1 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_2 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_3 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_4 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_5 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_6 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_7 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_8 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_9 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_10 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_11 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_12 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_13 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_14 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_15 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_16 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_17 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_18 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_19 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_20 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_21 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_22 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_23 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_24 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_25 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_26 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_27 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_28 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_29 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_30 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_31 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_32 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_33 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_34 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_35 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_36 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_37 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_38 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_39 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_40 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_41 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_42 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_43 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_44 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_45 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_46 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_47 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_48 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_49 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_50 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_51 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_52 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_53 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_54 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_55 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_56 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_57 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_58 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_59 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_60 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_61 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_62 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_63 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_64 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_65 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_66 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_67 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_68 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_69 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_70 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_71 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_72 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_73 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_74 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_75 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_76 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_77 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_78 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_79 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_80 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_81 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_82 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_83 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_84 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_85 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_86 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_87 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_88 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_89 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_90 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_91 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_92 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_93 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_94 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_95 | 0.0 | 1.0 | 0.0 |
| GAHLKLKM_96 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_97 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_98 | 1.0 | 0.0 | 1.0 |
| GAHLKLKM_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GAHLKLKM_14 | 26513 | 34035 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)