Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DFJDPHLC_33 | 303072 | 305046 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| DFJDPHLC_12 | 459 | 1193 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DFJDPHLC_33 | 303120 | 305045 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| DFJDPHLC_12 | 459 | 1193 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| DFJDPHLC_12 | 1965 | 3428 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| DFJDPHLC_12 | 3554 | 4768 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DFJDPHLC_33 | 303120 | 305042 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| DFJDPHLC_12 | 462 | 1193 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| DFJDPHLC_12 | 1968 | 3428 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| DFJDPHLC_12 | 3545 | 4768 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DFJDPHLC_70 | 69 | 748 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DFJDPHLC_1 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_2 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_3 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_4 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_5 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_6 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_7 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_8 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_9 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_10 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_11 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_12 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_13 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_14 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_15 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_16 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_17 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_18 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_19 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_20 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_21 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_22 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_23 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_24 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_25 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_26 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_27 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_28 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_29 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_30 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_31 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_32 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_33 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_34 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_35 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_36 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_37 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_38 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_39 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_40 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_41 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_42 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_43 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_44 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_45 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_46 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_47 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_48 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_49 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_50 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_51 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_52 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_53 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_54 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_55 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_56 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_57 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_58 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_59 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_60 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_61 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_62 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_63 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_64 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_66 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_67 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_68 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_69 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_70 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_71 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_72 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_73 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_74 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_75 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_76 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_77 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_78 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_79 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_80 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_81 | 1.0 | 0.0 | 1.0 |
| DFJDPHLC_82 | 0.0 | 1.0 | 0.0 |
| DFJDPHLC_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DFJDPHLC_7 | 91745 | 104808 | False | Unknown | VOG4572, |
| DFJDPHLC_44 | 99181 | 111051 | False | Myoviridae | VOG4575, |
Phigaro v2.4.0 (Database: Jan. 2024 release)