Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJKJMGBM_22 | 30913 | 32887 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| LJKJMGBM_86 | 194 | 997 | ErmF | ARO:3000498 | ErmF | 99.60 | 100.38 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJKJMGBM_22 | 30913 | 32838 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LJKJMGBM_86 | 246 | 997 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 93.88 | M17808 |
| LJKJMGBM_15 | 103030 | 104493 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| LJKJMGBM_15 | 101690 | 102904 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJKJMGBM_22 | 30916 | 32838 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LJKJMGBM_86 | 245 | 997 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 100.00 | 94.36 | WP_002682030.1 |
| LJKJMGBM_15 | 103030 | 104490 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| LJKJMGBM_15 | 101690 | 102913 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LJKJMGBM_74 | 1874 | 2553 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJKJMGBM_1 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_2 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_3 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_4 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_5 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_6 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_7 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_8 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_9 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_10 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_11 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_12 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_13 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_14 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_15 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_16 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_17 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_18 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_19 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_20 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_21 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_22 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_23 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_24 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_25 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_26 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_27 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_28 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_29 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_30 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_31 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_32 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_33 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_34 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_35 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_36 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_37 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_38 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_39 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_40 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_41 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_42 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_43 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_44 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_45 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_46 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_47 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_48 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_49 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_50 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_51 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_52 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_53 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_54 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_55 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_56 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_57 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_58 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_59 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_60 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_61 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_62 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_63 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_64 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_65 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_66 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_67 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_68 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_69 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_71 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_72 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_73 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_74 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_75 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_76 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_77 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_78 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_79 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_80 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_81 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_82 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_83 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_84 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_85 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_86 | 1.0 | 0.0 | 1.0 |
| LJKJMGBM_87 | 0.0 | 1.0 | 0.0 |
| LJKJMGBM_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJKJMGBM_6 | 93228 | 101417 | False | Unknown | VOG0572, |
| LJKJMGBM_12 | 84104 | 97167 | False | Unknown | VOG4572, |
| LJKJMGBM_44 | 148527 | 159238 | False | Unknown | VOG5821, |
Phigaro v2.4.0 (Database: Jan. 2024 release)