Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMCAFLPO_100 | 44590 | 46515 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMCAFLPO_100 | 44590 | 46515 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.61 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMCAFLPO_100 | 44590 | 46512 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMCAFLPO_1 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_2 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_3 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_4 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_5 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_6 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_7 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_8 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_9 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_10 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_11 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_12 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_13 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_14 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_15 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_16 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_17 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_18 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_19 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_20 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_21 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_22 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_23 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_24 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_25 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_26 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_27 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_28 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_29 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_30 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_31 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_32 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_33 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_34 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_35 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_36 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_37 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_38 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_39 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_40 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_41 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_42 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_43 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_44 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_45 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_46 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_47 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_48 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_49 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_50 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_51 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_52 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_53 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_54 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_55 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_56 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_57 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_58 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_59 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_60 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_61 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_62 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_63 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_64 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_65 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_66 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_67 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_68 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_69 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_70 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_71 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_72 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_73 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_74 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_75 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_76 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_77 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_78 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_79 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_80 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_81 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_82 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_83 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_84 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_85 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_86 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_87 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_88 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_89 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_90 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_91 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_92 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_93 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_94 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_95 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_96 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_97 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_98 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_99 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_100 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_101 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_102 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_103 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_104 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_105 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_106 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_107 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_108 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_109 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_110 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_111 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_112 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_113 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_114 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_115 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_116 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_117 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_118 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_119 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_120 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_121 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_122 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_123 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_124 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_125 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_126 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_127 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_128 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_129 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_130 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_131 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_132 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_133 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_134 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_135 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_136 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_137 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_138 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_139 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_140 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_141 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_142 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_143 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_144 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_145 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_146 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_147 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_148 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_149 | 0.0 | 1.0 | 0.0 |
| PMCAFLPO_150 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_151 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_152 | 1.0 | 0.0 | 1.0 |
| PMCAFLPO_153 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMCAFLPO_55 | 58774 | 63236 | False | Siphoviridae | VOG4553, |
Phigaro v2.4.0 (Database: Jan. 2024 release)