Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ALNLMLHF_92 | 27449 | 29443 | tet(Q) | ARO:3000191 | tet(Q) | 97.40 | 101.07 | Z21523.1 |
| ALNLMLHF_117 | 160 | 1125 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ALNLMLHF_117 | 160 | 1125 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| ALNLMLHF_117 | 160 | 1125 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| ALNLMLHF_117 | 160 | 1125 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| ALNLMLHF_117 | 160 | 1125 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| ALNLMLHF_92 | 27483 | 29395 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.16 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ALNLMLHF_117 | 160 | 1122 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| ALNLMLHF_92 | 27482 | 29395 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.43 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALNLMLHF_1 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_2 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_3 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_4 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_5 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_6 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_7 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_8 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_9 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_10 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_11 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_12 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_13 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_14 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_15 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_16 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_17 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_18 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_19 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_20 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_21 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_22 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_23 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_24 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_25 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_26 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_27 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_28 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_29 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_31 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_32 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_33 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_34 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_35 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_36 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_37 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_40 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_41 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_42 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_43 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_44 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_45 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_46 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_47 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_48 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_49 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_50 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_51 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_52 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_53 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_54 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_55 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_56 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_57 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_58 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_59 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_60 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_61 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_62 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_63 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_64 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_65 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_66 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_67 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_68 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_69 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_70 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_71 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_72 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_73 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_74 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_75 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_76 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_77 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_78 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_79 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_80 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_81 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_82 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_83 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_84 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_85 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_86 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_87 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_88 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_89 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_90 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_91 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_92 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_93 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_94 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_95 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_96 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_97 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_98 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_99 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_100 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_101 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_102 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_103 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_104 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_105 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_106 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_107 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_108 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_109 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_110 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_111 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_112 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_113 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_114 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_115 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_116 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_117 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_118 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_119 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_120 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_121 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_122 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_123 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_124 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_125 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_126 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_127 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_128 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_129 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_130 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_131 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_132 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_133 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_134 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_135 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_136 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_137 | 1.0 | 0.0 | 1.0 |
| ALNLMLHF_138 | 0.0 | 1.0 | 0.0 |
| ALNLMLHF_139 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALNLMLHF_51 | 111738 | 118284 | False | Siphoviridae | VOG0204, |
| ALNLMLHF_128 | 39991 | 52400 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)