Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGEOAPIF_22 | 264609 | 266534 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGEOAPIF_82 | 1800 | 2574 | cfxA3 | Ampicillin | 100.00 | 80.23 | AF472622 |
| KGEOAPIF_22 | 264609 | 266534 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGEOAPIF_22 | 264612 | 266534 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KGEOAPIF_82 | 1513 | 2574 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 90.68 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KGEOAPIF_87 | 17 | 597 | repUS2 | 582 / 681 | 98.45 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGEOAPIF_1 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_2 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_3 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_4 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_5 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_6 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_7 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_8 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_9 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_10 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_11 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_12 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_13 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_14 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_15 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_16 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_17 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_18 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_19 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_20 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_21 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_22 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_23 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_24 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_25 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_26 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_27 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_28 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_29 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_30 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_31 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_32 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_33 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_34 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_35 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_36 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_37 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_38 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_39 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_40 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_41 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_42 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_43 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_44 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_45 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_46 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_47 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_48 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_49 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_50 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_51 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_52 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_53 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_54 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_55 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_56 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_57 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_58 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_59 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_60 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_61 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_62 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_63 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_64 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_65 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_66 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_67 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_68 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_69 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_70 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_71 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_72 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_73 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_74 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_75 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_76 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_77 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_78 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_79 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_80 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_81 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_82 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_83 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_84 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_85 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_86 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_87 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_88 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_89 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_90 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_91 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_92 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_93 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_94 | 1.0 | 0.0 | 1.0 |
| KGEOAPIF_96 | 0.0 | 1.0 | 0.0 |
| KGEOAPIF_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGEOAPIF_15 | 66917 | 77297 | False | Siphoviridae | VOG0720, |
| KGEOAPIF_18 | 45120 | 52793 | False | Unknown | VOG5562, |
| KGEOAPIF_35 | 25989 | 34919 | False | Unknown | VOG0979, |
| KGEOAPIF_37 | 25182 | 33874 | False | Siphoviridae | VOG6488, |
| KGEOAPIF_47 | 2554 | 11750 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)