Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPKBEBKM_55 | 341924 | 342889 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| CPKBEBKM_11 | 322749 | 323954 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CPKBEBKM_31 | 15829 | 17754 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPKBEBKM_55 | 341924 | 342889 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| CPKBEBKM_31 | 15829 | 17754 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPKBEBKM_55 | 341924 | 342886 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| CPKBEBKM_31 | 15829 | 17751 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CPKBEBKM_11 | 322752 | 323954 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CPKBEBKM_11 | 322215 | 322724 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CPKBEBKM_47 | 1201 | 1781 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPKBEBKM_1 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_2 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_3 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_4 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_5 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_6 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_7 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_8 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_9 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_10 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_11 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_12 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_13 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_14 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_15 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_16 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_17 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_18 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_19 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_20 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_21 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_22 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_23 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_24 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_25 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_26 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_27 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_28 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_29 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_30 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_31 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_32 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_33 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_34 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_35 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_36 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_37 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_38 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_39 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_40 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_41 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_42 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_43 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_44 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_45 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_46 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_47 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_48 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_49 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_50 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_51 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_53 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_54 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_55 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_56 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_57 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_58 | 1.0 | 0.0 | 1.0 |
| CPKBEBKM_59 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_61 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_63 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_64 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_65 | 0.0 | 1.0 | 0.0 |
| CPKBEBKM_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPKBEBKM_3 | 79441 | 87626 | False | Unknown | VOG0572, |
| CPKBEBKM_17 | 70433 | 77977 | False | Siphoviridae | VOG6488, |
Phigaro v2.4.0 (Database: Jan. 2024 release)