Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJNJNFDN_33 | 322162 | 323367 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LJNJNFDN_22 | 217255 | 218220 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| LJNJNFDN_29 | 15829 | 17754 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJNJNFDN_22 | 217255 | 218220 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| LJNJNFDN_29 | 15829 | 17754 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJNJNFDN_22 | 217258 | 218220 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| LJNJNFDN_29 | 15829 | 17751 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LJNJNFDN_33 | 322165 | 323367 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| LJNJNFDN_33 | 321628 | 322137 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LJNJNFDN_45 | 1077 | 1657 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJNJNFDN_1 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_2 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_3 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_4 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_5 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_6 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_7 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_8 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_9 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_10 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_11 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_12 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_13 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_14 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_15 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_16 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_17 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_18 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_19 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_20 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_21 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_22 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_23 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_24 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_25 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_26 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_27 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_28 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_29 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_30 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_31 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_32 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_33 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_34 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_35 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_36 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_37 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_38 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_39 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_40 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_41 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_42 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_43 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_44 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_45 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_46 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_47 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_48 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_49 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_50 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_51 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_52 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_53 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_54 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_55 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_56 | 1.0 | 0.0 | 1.0 |
| LJNJNFDN_59 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_61 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_62 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_63 | 0.0 | 1.0 | 0.0 |
| LJNJNFDN_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJNJNFDN_1 | 109632 | 117817 | False | Unknown | VOG4573, |
| LJNJNFDN_15 | 13236 | 20780 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)