Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFNGONHC_44 | 169081 | 169818 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| LFNGONHC_62 | 128064 | 129989 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LFNGONHC_62 | 128064 | 129989 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LFNGONHC_44 | 169081 | 169818 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFNGONHC_62 | 128064 | 129986 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LFNGONHC_44 | 169084 | 169818 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFNGONHC_1 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_2 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_3 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_4 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_5 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_6 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_7 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_8 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_9 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_10 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_11 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_12 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_13 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_14 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_15 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_16 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_17 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_18 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_19 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_20 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_21 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_22 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_23 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_24 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_25 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_26 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_27 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_28 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_29 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_30 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_31 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_32 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_33 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_34 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_35 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_36 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_37 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_38 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_39 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_40 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_41 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_42 | 1.0 | 0.0 | 1.0 |
| LFNGONHC_43 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_44 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_45 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_46 | 1.0 | 0.0 | 1.0 |
| LFNGONHC_47 | 1.0 | 0.0 | 1.0 |
| LFNGONHC_48 | 1.0 | 0.0 | 1.0 |
| LFNGONHC_49 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_50 | 1.0 | 0.0 | 1.0 |
| LFNGONHC_52 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_54 | 1.0 | 0.0 | 1.0 |
| LFNGONHC_55 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_57 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_59 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_60 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_61 | 0.0 | 1.0 | 0.0 |
| LFNGONHC_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFNGONHC_44 | 189108 | 198006 | True | Siphoviridae | VOG7108, |
| LFNGONHC_55 | 368259 | 374907 | False | Siphoviridae | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)