Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBLIMGAG_33 | 216214 | 218139 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NBLIMGAG_13 | 121435 | 122571 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| NBLIMGAG_13 | 120422 | 121222 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| NBLIMGAG_62 | 872 | 1837 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NBLIMGAG_62 | 872 | 1837 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| NBLIMGAG_13 | 120422 | 121222 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| NBLIMGAG_13 | 121435 | 122601 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| NBLIMGAG_33 | 216214 | 218139 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBLIMGAG_62 | 872 | 1834 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| NBLIMGAG_13 | 120422 | 121219 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| NBLIMGAG_13 | 121438 | 122601 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| NBLIMGAG_33 | 216217 | 218139 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NBLIMGAG_74 | 1378 | 1958 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBLIMGAG_1 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_2 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_3 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_4 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_5 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_6 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_7 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_8 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_9 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_10 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_11 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_12 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_13 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_14 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_15 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_16 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_17 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_18 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_19 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_20 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_21 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_22 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_23 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_24 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_25 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_26 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_27 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_28 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_29 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_30 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_31 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_32 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_33 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_34 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_35 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_36 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_37 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_38 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_39 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_40 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_41 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_42 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_43 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_44 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_45 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_46 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_47 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_48 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_49 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_50 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_51 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_52 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_53 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_54 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_55 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_56 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_57 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_58 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_59 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_60 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_61 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_62 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_63 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_64 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_65 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_66 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_67 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_69 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_70 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_71 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_72 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_73 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_74 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_75 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_76 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_77 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_78 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_79 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_80 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_81 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_82 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_83 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_84 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_85 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_86 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_87 | 1.0 | 0.0 | 1.0 |
| NBLIMGAG_88 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_89 | 0.0 | 1.0 | 0.0 |
| NBLIMGAG_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NBLIMGAG_11 | 12161 | 16360 | False | Siphoviridae | VOG0749, |
| NBLIMGAG_11 | 394785 | 400988 | False | Unknown | VOG0572, |
| NBLIMGAG_32 | 42848 | 50486 | False | Unknown | VOG1873, |
| NBLIMGAG_88 | 198314 | 204714 | False | Siphoviridae | VOG4544, |
| NBLIMGAG_90 | 115307 | 119787 | False | Unknown | VOG8584, |
Phigaro v2.4.0 (Database: Jan. 2024 release)