Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DKEFICPH_22 | 215703 | 217628 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| DKEFICPH_50 | 19464 | 20600 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| DKEFICPH_50 | 18451 | 19251 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| DKEFICPH_67 | 8234 | 9199 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DKEFICPH_67 | 8234 | 9199 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| DKEFICPH_50 | 18451 | 19251 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| DKEFICPH_50 | 19464 | 20630 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| DKEFICPH_22 | 215703 | 217628 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DKEFICPH_67 | 8237 | 9199 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| DKEFICPH_50 | 18451 | 19248 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| DKEFICPH_50 | 19467 | 20630 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| DKEFICPH_22 | 215706 | 217628 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DKEFICPH_82 | 911 | 1491 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DKEFICPH_1 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_2 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_3 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_4 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_5 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_6 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_7 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_8 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_9 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_10 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_11 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_12 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_13 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_14 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_15 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_16 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_17 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_18 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_19 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_20 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_21 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_22 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_23 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_24 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_25 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_26 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_27 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_28 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_29 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_30 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_31 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_32 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_33 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_34 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_35 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_36 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_37 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_38 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_39 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_40 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_41 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_42 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_43 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_44 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_45 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_46 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_47 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_48 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_49 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_50 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_51 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_52 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_53 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_54 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_55 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_56 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_57 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_58 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_59 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_60 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_61 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_62 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_63 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_64 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_65 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_66 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_67 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_68 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_69 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_70 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_71 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_72 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_73 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_75 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_76 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_77 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_78 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_79 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_80 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_81 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_82 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_83 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_84 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_85 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_86 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_87 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_88 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_89 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_90 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_91 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_92 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_93 | 0.0 | 1.0 | 0.0 |
| DKEFICPH_94 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_95 | 1.0 | 0.0 | 1.0 |
| DKEFICPH_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DKEFICPH_1 | 93248 | 97728 | False | Unknown | VOG0189, |
| DKEFICPH_11 | 12724 | 16923 | False | Siphoviridae | VOG0749, |
| DKEFICPH_11 | 395348 | 401551 | False | Unknown | VOG0572, |
| DKEFICPH_34 | 42848 | 50486 | False | Unknown | VOG1873, |
| DKEFICPH_96 | 9668 | 16068 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)