Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDOICFNH_63 | 281355 | 282320 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| EDOICFNH_3 | 150964 | 151602 | ErmG | ARO:3000522 | ErmG | 99.52 | 86.89 | L42817.1 |
| EDOICFNH_11 | 129845 | 131819 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| EDOICFNH_6 | 117111 | 118316 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EDOICFNH_63 | 281355 | 282320 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| EDOICFNH_11 | 129845 | 131770 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| EDOICFNH_18 | 68289 | 69155 | ant(6)-Ia | Streptomycin | 99.88 | 100.00 | KF864551 |
| EDOICFNH_3 | 150867 | 151602 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 100.00 | M15332 |
| EDOICFNH_3 | 152374 | 153837 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| EDOICFNH_3 | 153963 | 155177 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDOICFNH_18 | 68292 | 69155 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| EDOICFNH_63 | 281355 | 282317 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| EDOICFNH_6 | 118341 | 118850 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| EDOICFNH_11 | 129848 | 131770 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| EDOICFNH_3 | 150976 | 151602 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | PARTIALX | 99.52 | 85.66 | WP_014387027.1 |
| EDOICFNH_6 | 117111 | 118313 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| EDOICFNH_3 | 152377 | 153837 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| EDOICFNH_3 | 153954 | 155177 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EDOICFNH_45 | 287 | 966 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
| EDOICFNH_50 | 275 | 536 | Col(MG828) | 262 / 262 | 93.51 | NC008486 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDOICFNH_1 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_2 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_3 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_4 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_5 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_6 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_7 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_8 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_9 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_10 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_11 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_12 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_13 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_14 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_15 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_16 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_17 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_18 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_19 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_20 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_21 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_22 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_23 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_24 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_25 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_26 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_27 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_28 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_29 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_30 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_31 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_32 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_33 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_34 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_35 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_36 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_37 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_38 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_39 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_40 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_41 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_42 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_43 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_44 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_45 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_46 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_47 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_49 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_50 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_51 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_52 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_53 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_55 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_56 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_57 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_58 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_59 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_60 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_61 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_62 | 1.0 | 0.0 | 1.0 |
| EDOICFNH_63 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_64 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_65 | 0.0 | 1.0 | 0.0 |
| EDOICFNH_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDOICFNH_9 | 73531 | 81728 | False | Unknown | VOG0226, |
Phigaro v2.4.0 (Database: Jan. 2024 release)