Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGIHNNAB_94 | 42220 | 43185 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| IGIHNNAB_122 | 12943 | 14916 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| IGIHNNAB_129 | 113 | 913 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IGIHNNAB_94 | 42220 | 43185 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| IGIHNNAB_122 | 12991 | 14916 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| IGIHNNAB_129 | 113 | 913 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.25 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGIHNNAB_94 | 42223 | 43185 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| IGIHNNAB_122 | 12991 | 14913 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| IGIHNNAB_129 | 1126 | 1965 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| IGIHNNAB_129 | 113 | 910 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.12 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IGIHNNAB_39 | 749 | 1329 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IGIHNNAB_1 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_2 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_3 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_4 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_5 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_6 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_7 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_8 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_9 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_10 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_11 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_12 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_13 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_14 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_15 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_16 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_17 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_18 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_20 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_21 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_22 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_23 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_24 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_25 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_26 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_27 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_28 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_29 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_30 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_31 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_32 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_33 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_34 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_35 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_36 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_37 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_38 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_39 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_40 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_41 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_42 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_43 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_44 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_45 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_46 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_47 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_48 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_49 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_50 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_51 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_52 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_53 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_54 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_55 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_56 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_57 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_58 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_59 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_60 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_61 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_62 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_63 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_64 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_65 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_66 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_67 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_68 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_69 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_70 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_71 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_72 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_73 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_74 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_75 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_76 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_77 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_78 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_79 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_80 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_81 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_82 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_83 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_84 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_85 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_86 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_87 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_88 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_89 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_90 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_91 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_92 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_93 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_94 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_95 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_96 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_97 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_98 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_99 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_100 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_101 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_102 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_103 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_104 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_105 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_106 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_107 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_108 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_109 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_110 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_111 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_112 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_113 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_114 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_115 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_116 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_117 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_118 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_119 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_120 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_121 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_122 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_123 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_124 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_125 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_126 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_127 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_128 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_129 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_130 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_131 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_132 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_133 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_134 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_135 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_136 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_137 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_138 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_139 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_140 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_141 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_142 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_143 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_144 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_145 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_146 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_147 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_148 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_149 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_150 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_151 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_152 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_153 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_154 | 1.0 | 0.0 | 1.0 |
| IGIHNNAB_155 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_156 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_157 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_158 | 0.0 | 1.0 | 0.0 |
| IGIHNNAB_159 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IGIHNNAB_11 | 64388 | 69677 | False | Myoviridae | VOG1931, |
| IGIHNNAB_22 | 62686 | 69334 | False | Siphoviridae | VOG0204, |
| IGIHNNAB_104 | 37899 | 46084 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)