Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFAPOGNC_116 | 31524 | 33497 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| AFAPOGNC_74 | 10126 | 10989 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| AFAPOGNC_74 | 8050 | 8883 | ErmF | ARO:3000498 | ErmF | 99.62 | 104.14 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AFAPOGNC_74 | 8083 | 8883 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| AFAPOGNC_116 | 31524 | 33449 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFAPOGNC_74 | 10129 | 10989 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| AFAPOGNC_74 | 8083 | 8880 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| AFAPOGNC_116 | 31527 | 33449 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AFAPOGNC_41 | 1878 | 2557 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFAPOGNC_1 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_2 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_3 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_4 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_5 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_6 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_7 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_8 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_9 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_10 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_11 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_12 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_13 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_14 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_15 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_16 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_17 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_18 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_19 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_20 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_21 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_22 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_23 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_24 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_25 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_26 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_28 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_29 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_30 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_31 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_32 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_33 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_34 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_35 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_36 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_37 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_38 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_39 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_40 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_41 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_42 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_43 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_44 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_45 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_46 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_47 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_48 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_49 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_50 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_51 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_52 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_53 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_54 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_55 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_56 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_57 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_58 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_59 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_60 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_61 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_62 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_63 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_64 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_65 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_66 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_67 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_68 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_69 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_70 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_71 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_72 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_73 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_74 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_75 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_76 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_77 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_78 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_79 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_80 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_81 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_82 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_83 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_84 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_85 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_86 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_87 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_88 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_89 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_90 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_91 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_92 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_93 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_94 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_95 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_96 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_97 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_98 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_99 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_100 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_101 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_102 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_103 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_104 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_105 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_106 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_107 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_108 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_109 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_110 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_111 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_112 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_113 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_114 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_115 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_116 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_117 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_118 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_119 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_120 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_121 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_122 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_123 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_124 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_125 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_126 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_127 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_128 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_129 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_130 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_131 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_132 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_133 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_134 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_135 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_136 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_137 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_138 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_139 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_140 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_141 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_142 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_143 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_144 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_145 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_146 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_147 | 1.0 | 0.0 | 1.0 |
| AFAPOGNC_148 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_149 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_150 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_151 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_152 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_153 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_154 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_155 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_156 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_157 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_158 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_159 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_160 | 0.0 | 1.0 | 0.0 |
| AFAPOGNC_161 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFAPOGNC_115 | 3159 | 16430 | False | Unknown | VOG3699, |
| AFAPOGNC_120 | 21578 | 30247 | False | Siphoviridae | VOG0749, |
| AFAPOGNC_146 | 8873 | 18069 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)