Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCOJFPOF_67 | 20779 | 22704 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| FCOJFPOF_98 | 19606 | 21531 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FCOJFPOF_67 | 20779 | 22704 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| FCOJFPOF_98 | 21818 | 22619 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCOJFPOF_67 | 20782 | 22704 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| FCOJFPOF_98 | 19609 | 21531 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| FCOJFPOF_98 | 21821 | 22501 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | INTERNAL_STOP | 86.34 | 85.34 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FCOJFPOF_16 | 694 | 946 | Col(MG828) | 253 / 262 | 92.49 | NC008486 |
| FCOJFPOF_12 | 1460 | 1611 | Col156 | 152 / 154 | 90.79 | NC009781 |
| FCOJFPOF_124 | 1187 | 1317 | ColRNAI | 131 / 130 | 90.08 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCOJFPOF_1 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_2 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_3 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_4 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_5 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_6 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_7 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_8 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_9 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_10 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_11 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_12 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_13 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_15 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_16 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_17 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_18 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_19 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_20 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_21 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_22 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_24 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_25 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_26 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_27 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_28 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_29 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_30 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_31 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_32 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_33 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_34 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_35 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_36 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_37 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_38 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_39 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_40 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_41 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_42 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_43 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_44 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_45 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_46 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_47 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_48 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_49 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_50 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_51 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_52 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_53 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_54 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_55 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_56 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_57 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_58 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_59 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_60 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_61 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_62 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_63 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_64 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_65 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_66 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_67 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_68 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_69 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_70 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_71 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_72 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_73 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_74 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_75 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_76 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_77 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_78 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_79 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_80 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_81 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_82 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_83 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_84 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_85 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_86 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_87 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_88 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_89 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_90 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_91 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_92 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_93 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_94 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_95 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_96 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_97 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_98 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_99 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_100 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_101 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_102 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_103 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_104 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_105 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_106 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_107 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_108 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_109 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_110 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_111 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_112 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_113 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_114 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_115 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_116 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_117 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_118 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_119 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_120 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_121 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_122 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_123 | 0.0 | 1.0 | 0.0 |
| FCOJFPOF_124 | 1.0 | 0.0 | 1.0 |
| FCOJFPOF_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCOJFPOF_51 | 40565 | 50434 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)