Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MPGAAFON_4 | 167286 | 169211 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| MPGAAFON_19 | 137 | 937 | ErmF | ARO:3000498 | ErmF | 98.12 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MPGAAFON_19 | 137 | 937 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
| MPGAAFON_4 | 167286 | 169211 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.88 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MPGAAFON_4 | 167286 | 169208 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
| MPGAAFON_19 | 137 | 934 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MPGAAFON_1 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_2 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_3 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_4 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_5 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_6 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_7 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_8 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_9 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_10 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_11 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_12 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_13 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_14 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_15 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_16 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_17 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_18 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_19 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_20 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_21 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_22 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_23 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_24 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_25 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_26 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_27 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_28 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_29 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_30 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_31 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_32 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_33 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_34 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_35 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_36 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_37 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_38 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_39 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_40 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_41 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_42 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_43 | 1.0 | 0.0 | 1.0 |
| MPGAAFON_44 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_45 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_46 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_47 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_49 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_50 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_51 | 1.0 | 0.0 | 1.0 |
| MPGAAFON_52 | 1.0 | 0.0 | 1.0 |
| MPGAAFON_53 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_54 | 1.0 | 0.0 | 1.0 |
| MPGAAFON_55 | 1.0 | 0.0 | 1.0 |
| MPGAAFON_56 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_57 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_58 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_59 | 0.0 | 1.0 | 0.0 |
| MPGAAFON_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MPGAAFON_53 | 107187 | 117562 | False | Unknown | VOG3992, |
| MPGAAFON_59 | 218156 | 222108 | False | Myoviridae | VOG5380, |
Phigaro v2.4.0 (Database: Jan. 2024 release)