Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMPKLFHE_23 | 44187 | 46112 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| MMPKLFHE_23 | 29389 | 30189 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| MMPKLFHE_23 | 27944 | 29083 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| MMPKLFHE_23 | 26609 | 27745 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| MMPKLFHE_23 | 25570 | 26433 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MMPKLFHE_23 | 29389 | 30189 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| MMPKLFHE_23 | 44187 | 46112 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| MMPKLFHE_23 | 26609 | 27775 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMPKLFHE_23 | 25573 | 26433 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| MMPKLFHE_23 | 26612 | 27775 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| MMPKLFHE_23 | 27947 | 29083 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| MMPKLFHE_23 | 29389 | 30186 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| MMPKLFHE_23 | 44187 | 46109 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MMPKLFHE_67 | 2331 | 2828 | repUS2 | 499 / 681 | 99.40 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MMPKLFHE_1 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_2 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_3 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_4 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_5 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_6 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_7 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_8 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_9 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_10 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_11 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_12 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_13 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_14 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_15 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_16 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_17 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_18 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_19 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_20 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_21 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_22 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_23 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_24 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_25 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_26 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_27 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_28 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_29 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_30 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_31 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_32 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_33 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_34 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_35 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_36 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_37 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_38 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_39 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_40 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_41 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_42 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_43 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_44 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_45 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_46 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_47 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_48 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_49 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_50 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_51 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_52 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_53 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_54 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_55 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_56 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_57 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_58 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_59 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_60 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_62 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_63 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_64 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_65 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_66 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_67 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_68 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_69 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_70 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_71 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_72 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_74 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_75 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_77 | 1.0 | 0.0 | 1.0 |
| MMPKLFHE_78 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_79 | 0.0 | 1.0 | 0.0 |
| MMPKLFHE_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MMPKLFHE_6 | 101447 | 108495 | False | Unknown | VOG0572, |
| MMPKLFHE_28 | 12330 | 24679 | False | Unknown | VOG0083, |
| MMPKLFHE_79 | 35294 | 44714 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)