Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MABNKIDO_65 | 168543 | 170468 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| MABNKIDO_65 | 153745 | 154545 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| MABNKIDO_65 | 152300 | 153439 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| MABNKIDO_65 | 150965 | 152101 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| MABNKIDO_65 | 149926 | 150789 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MABNKIDO_65 | 153745 | 154545 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| MABNKIDO_65 | 168543 | 170468 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| MABNKIDO_65 | 150965 | 152131 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MABNKIDO_65 | 149929 | 150789 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| MABNKIDO_65 | 150968 | 152131 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| MABNKIDO_65 | 152303 | 153439 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| MABNKIDO_65 | 153745 | 154542 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| MABNKIDO_65 | 168543 | 170465 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MABNKIDO_51 | 408 | 1087 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MABNKIDO_1 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_2 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_3 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_4 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_5 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_6 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_7 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_8 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_9 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_10 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_11 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_12 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_13 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_14 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_15 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_16 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_17 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_18 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_19 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_20 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_21 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_22 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_23 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_24 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_25 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_26 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_27 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_28 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_29 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_30 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_31 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_32 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_33 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_34 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_35 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_36 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_37 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_38 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_39 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_40 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_41 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_42 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_43 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_44 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_45 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_47 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_48 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_49 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_50 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_51 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_52 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_53 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_54 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_55 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_56 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_57 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_59 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_61 | 1.0 | 0.0 | 1.0 |
| MABNKIDO_62 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_63 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_64 | 0.0 | 1.0 | 0.0 |
| MABNKIDO_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MABNKIDO_10 | 101447 | 108495 | False | Unknown | VOG0572, |
| MABNKIDO_26 | 12330 | 24679 | False | Unknown | VOG0083, |
| MABNKIDO_44 | 120128 | 129548 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)