Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBMBEKLD_89 | 34473 | 35207 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| GBMBEKLD_83 | 18046 | 19971 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| GBMBEKLD_80 | 92 | 1057 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 109.35 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBMBEKLD_80 | 92 | 1057 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| GBMBEKLD_89 | 34473 | 35207 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| GBMBEKLD_83 | 18046 | 19971 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBMBEKLD_80 | 92 | 1054 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| GBMBEKLD_89 | 34473 | 35204 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| GBMBEKLD_83 | 18049 | 19971 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBMBEKLD_1 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_2 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_3 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_5 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_6 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_7 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_8 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_9 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_10 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_11 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_12 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_13 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_14 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_15 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_16 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_17 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_18 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_19 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_20 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_21 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_22 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_23 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_24 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_25 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_26 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_27 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_28 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_29 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_30 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_31 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_32 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_33 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_34 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_35 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_36 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_37 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_38 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_39 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_40 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_41 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_42 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_43 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_44 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_45 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_46 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_47 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_48 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_49 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_50 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_51 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_52 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_53 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_54 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_55 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_56 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_57 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_58 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_59 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_60 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_61 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_62 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_63 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_64 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_65 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_66 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_67 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_68 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_69 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_70 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_71 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_72 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_73 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_74 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_75 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_76 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_77 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_78 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_79 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_80 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_81 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_82 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_83 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_84 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_85 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_86 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_87 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_88 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_89 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_90 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_91 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_92 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_93 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_94 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_95 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_96 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_97 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_98 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_99 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_100 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_101 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_102 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_103 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_104 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_105 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_106 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_107 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_108 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_109 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_110 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_111 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_112 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_113 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_114 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_115 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_116 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_117 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_118 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_119 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_120 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_121 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_122 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_123 | 0.0 | 1.0 | 0.0 |
| GBMBEKLD_124 | 1.0 | 0.0 | 1.0 |
| GBMBEKLD_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBMBEKLD_38 | 56686 | 65325 | False | Siphoviridae | VOG7238, |
| GBMBEKLD_73 | 14065 | 24408 | False | Unknown | VOG5235, |
Phigaro v2.4.0 (Database: Jan. 2024 release)