Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABMNAOJG_14 | 100048 | 101994 | tet(Q) | ARO:3000191 | tet(Q) | 97.02 | 98.63 | Z21523.1 |
| ABMNAOJG_42 | 34473 | 35207 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| ABMNAOJG_39 | 18046 | 19971 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ABMNAOJG_42 | 34473 | 35207 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| ABMNAOJG_69 | 8234 | 8919 | cfxA3 | Ampicillin | 100.00 | 71.01 | AF472622 |
| ABMNAOJG_14 | 100048 | 101960 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.12 | 99.33 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABMNAOJG_42 | 34473 | 35204 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| ABMNAOJG_69 | 8237 | 8917 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | PARTIAL_CONTIG_ENDX | 100.00 | 70.72 | WP_004348227.1 |
| ABMNAOJG_14 | 100048 | 101961 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.81 | 99.53 | WP_004293868.1 |
| ABMNAOJG_39 | 18049 | 19971 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABMNAOJG_1 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_2 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_3 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_4 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_5 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_6 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_7 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_8 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_9 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_10 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_11 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_12 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_13 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_14 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_15 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_16 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_17 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_18 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_19 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_20 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_21 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_22 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_23 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_24 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_25 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_26 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_27 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_28 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_29 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_30 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_31 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_32 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_33 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_34 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_35 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_36 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_37 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_38 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_39 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_40 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_41 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_42 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_43 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_44 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_45 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_46 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_47 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_48 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_49 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_50 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_51 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_52 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_53 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_54 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_55 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_56 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_57 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_58 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_59 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_60 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_61 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_62 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_63 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_64 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_65 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_66 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_67 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_68 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_69 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_70 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_71 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_72 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_74 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_75 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_76 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_77 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_78 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_79 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_80 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_81 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_82 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_83 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_84 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_85 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_86 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_87 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_88 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_89 | 0.0 | 1.0 | 0.0 |
| ABMNAOJG_90 | 1.0 | 0.0 | 1.0 |
| ABMNAOJG_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABMNAOJG_15 | 56686 | 65325 | False | Siphoviridae | VOG7238, |
| ABMNAOJG_18 | 14065 | 24408 | False | Unknown | VOG5235, |
| ABMNAOJG_34 | 10277 | 20415 | False | Unknown | VOG9345, |
Phigaro v2.4.0 (Database: Jan. 2024 release)