Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGJFOFOG_23 | 27473 | 28438 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| CGJFOFOG_53 | 20070 | 20807 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| CGJFOFOG_52 | 4338 | 6263 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGJFOFOG_53 | 16865 | 17731 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| CGJFOFOG_23 | 27473 | 28438 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| CGJFOFOG_53 | 20070 | 20807 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| CGJFOFOG_52 | 4338 | 6263 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGJFOFOG_53 | 16868 | 17731 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| CGJFOFOG_23 | 27476 | 28438 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| CGJFOFOG_53 | 20073 | 20807 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| CGJFOFOG_52 | 4338 | 6260 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGJFOFOG_1 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_2 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_3 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_4 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_5 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_6 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_7 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_8 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_9 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_10 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_11 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_12 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_13 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_14 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_15 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_16 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_17 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_18 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_19 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_20 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_21 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_22 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_23 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_24 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_25 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_26 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_27 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_28 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_29 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_30 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_31 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_32 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_33 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_34 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_35 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_36 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_37 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_38 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_39 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_40 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_41 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_42 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_43 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_44 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_45 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_46 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_47 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_48 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_49 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_50 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_51 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_52 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_53 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_54 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_55 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_56 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_57 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_58 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_59 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_60 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_61 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_62 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_63 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_64 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_65 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_66 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_68 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_69 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_70 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_71 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_72 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_73 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_74 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_75 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_76 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_77 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_78 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_79 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_80 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_81 | 1.0 | 0.0 | 1.0 |
| CGJFOFOG_82 | 0.0 | 1.0 | 0.0 |
| CGJFOFOG_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)