Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPPOIGIK_3 | 220125 | 222050 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| GPPOIGIK_17 | 75773 | 76573 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| GPPOIGIK_17 | 73561 | 75486 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| GPPOIGIK_21 | 9398 | 10363 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPPOIGIK_21 | 9398 | 10363 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| GPPOIGIK_21 | 9398 | 10363 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| GPPOIGIK_21 | 9398 | 10363 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| GPPOIGIK_21 | 9398 | 10363 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| GPPOIGIK_17 | 75773 | 76573 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| GPPOIGIK_3 | 220125 | 222050 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPPOIGIK_21 | 9401 | 10363 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| GPPOIGIK_17 | 75776 | 76573 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GPPOIGIK_3 | 220128 | 222050 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
| GPPOIGIK_17 | 73564 | 75486 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPPOIGIK_1 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_2 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_3 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_4 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_5 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_6 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_7 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_8 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_9 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_10 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_11 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_12 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_13 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_14 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_15 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_16 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_17 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_18 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_19 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_20 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_21 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_22 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_23 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_24 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_25 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_26 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_27 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_28 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_29 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_30 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_31 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_32 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_33 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_34 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_35 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_36 | 1.0 | 0.0 | 1.0 |
| GPPOIGIK_37 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_38 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_39 | 1.0 | 0.0 | 1.0 |
| GPPOIGIK_40 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_42 | 1.0 | 0.0 | 1.0 |
| GPPOIGIK_43 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_44 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_46 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_47 | 1.0 | 0.0 | 1.0 |
| GPPOIGIK_48 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_49 | 1.0 | 0.0 | 1.0 |
| GPPOIGIK_50 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_51 | 1.0 | 0.0 | 1.0 |
| GPPOIGIK_52 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_53 | 1.0 | 0.0 | 1.0 |
| GPPOIGIK_54 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_55 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_56 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_57 | 0.0 | 1.0 | 0.0 |
| GPPOIGIK_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPPOIGIK_6 | 46183 | 55603 | False | Siphoviridae | VOG0749, |
| GPPOIGIK_44 | 161042 | 171916 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)