Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGGHJEMC_3 | 23199 | 25124 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGGHJEMC_3 | 23199 | 25124 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGGHJEMC_3 | 23202 | 25124 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CGGHJEMC_49 | 499 | 760 | Col(MG828) | 262 / 262 | 91.60 | NC008486 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGGHJEMC_1 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_2 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_3 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_4 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_5 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_6 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_7 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_8 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_9 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_10 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_11 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_12 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_13 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_14 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_15 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_16 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_17 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_18 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_19 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_20 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_21 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_22 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_23 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_24 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_25 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_26 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_27 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_28 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_29 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_30 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_31 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_32 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_33 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_34 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_35 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_36 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_37 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_38 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_39 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_40 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_41 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_42 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_43 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_44 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_45 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_46 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_47 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_48 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_49 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_51 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_52 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_53 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_54 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_55 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_56 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_57 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_58 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_59 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_60 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_61 | 1.0 | 0.0 | 1.0 |
| CGGHJEMC_62 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_63 | 0.0 | 1.0 | 0.0 |
| CGGHJEMC_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGGHJEMC_59 | 202147 | 214496 | False | Unknown | VOG0083, |
| CGGHJEMC_64 | 13237 | 20781 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)