Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIEMJMBK_15 | 100319 | 102244 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| OIEMJMBK_53 | 5162 | 5962 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| OIEMJMBK_53 | 3783 | 4949 | tet(X) | ARO:3000205 | tet(X) | 91.75 | 100.00 | M37699.1 |
| OIEMJMBK_53 | 2769 | 3632 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| OIEMJMBK_53 | 1679 | 2593 | EstT | ARO:3007459 | EstT | 99.02 | 99.35 | CP094932.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OIEMJMBK_53 | 5162 | 5962 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| OIEMJMBK_15 | 100319 | 102244 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
| OIEMJMBK_11 | 136146 | 137363 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
| OIEMJMBK_53 | 3783 | 4949 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 93.57 | 100.00 | GU014535 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIEMJMBK_53 | 2769 | 3629 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| OIEMJMBK_53 | 5165 | 5962 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| OIEMJMBK_30 | 26679 | 27791 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.46 | 92.52 | WP_063853729.1 |
| OIEMJMBK_30 | 26142 | 26651 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| OIEMJMBK_53 | 1751 | 2590 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| OIEMJMBK_15 | 100319 | 102241 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
| OIEMJMBK_11 | 136143 | 137363 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| OIEMJMBK_53 | 3783 | 4946 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 92.27 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OIEMJMBK_1 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_2 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_3 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_4 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_5 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_6 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_7 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_8 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_9 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_10 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_11 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_12 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_13 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_14 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_15 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_16 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_17 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_18 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_19 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_20 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_21 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_22 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_23 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_24 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_25 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_26 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_27 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_28 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_29 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_30 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_31 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_32 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_33 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_34 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_35 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_36 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_37 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_38 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_39 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_40 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_41 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_42 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_43 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_44 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_45 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_46 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_47 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_48 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_49 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_50 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_51 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_52 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_53 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_54 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_55 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_56 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_58 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_59 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_60 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_61 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_62 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_63 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_64 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_65 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_66 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_67 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_68 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_69 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_70 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_71 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_72 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_73 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_74 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_75 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_76 | 1.0 | 0.0 | 1.0 |
| OIEMJMBK_77 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_78 | 0.0 | 1.0 | 0.0 |
| OIEMJMBK_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OIEMJMBK_21 | 58028 | 65572 | False | Siphoviridae | VOG6488, |
| OIEMJMBK_78 | 92227 | 101647 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)