Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LIEPICOI_3 | 14811 | 16757 | tet(Q) | ARO:3000191 | tet(Q) | 96.39 | 98.63 | Z21523.1 |
| LIEPICOI_10 | 5161 | 5961 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| LIEPICOI_10 | 3812 | 4948 | tet(X4) | ARO:3004720 | tet(X4) | 89.95 | 98.18 | MK134376.1 |
| LIEPICOI_10 | 2768 | 3631 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LIEPICOI_10 | 5161 | 5961 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| LIEPICOI_3 | 14845 | 16757 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 99.33 | L33696 |
| LIEPICOI_10 | 3782 | 4948 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 93.57 | 100.00 | GU014535 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LIEPICOI_10 | 2768 | 3628 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LIEPICOI_10 | 5164 | 5961 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| LIEPICOI_3 | 14844 | 16757 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.37 | 99.53 | WP_063856407.1 |
| LIEPICOI_10 | 1750 | 2589 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| LIEPICOI_10 | 3782 | 4945 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 92.27 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LIEPICOI_1 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_2 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_3 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_4 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_5 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_6 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_7 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_8 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_9 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_10 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_11 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_12 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_13 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_14 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_15 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_16 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_17 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_18 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_19 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_20 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_21 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_22 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_23 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_24 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_25 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_26 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_27 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_28 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_29 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_30 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_31 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_32 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_33 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_34 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_35 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_36 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_37 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_38 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_39 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_40 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_41 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_42 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_43 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_44 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_45 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_47 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_48 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_49 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_50 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_51 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_52 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_53 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_54 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_55 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_56 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_57 | 1.0 | 0.0 | 1.0 |
| LIEPICOI_58 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_60 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_61 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_62 | 0.0 | 1.0 | 0.0 |
| LIEPICOI_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)