Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFLOJGLJ_11 | 13824 | 15743 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OFLOJGLJ_11 | 13824 | 15743 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFLOJGLJ_11 | 13827 | 15743 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OFLOJGLJ_60 | 4297 | 4491 | CspA | 1.60e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OFLOJGLJ_63 | 7597 | 8635 | repUS67 | 1050 / 1039 | 89.05 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OFLOJGLJ_1 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_2 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_3 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_4 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_5 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_6 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_7 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_8 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_9 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_10 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_11 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_12 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_13 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_14 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_15 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_16 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_17 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_18 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_19 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_20 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_21 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_22 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_23 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_24 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_25 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_26 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_27 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_28 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_29 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_30 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_31 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_32 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_33 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_44 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_54 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_55 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_56 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_57 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_58 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_59 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_60 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_61 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_62 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_63 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_64 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_65 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_66 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_67 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_68 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_69 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_70 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_71 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_72 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_73 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_74 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_75 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_76 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_77 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_78 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_79 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_80 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_81 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_82 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_83 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_84 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_85 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_86 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_87 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_88 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_89 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_90 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_91 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_92 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_93 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_94 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_95 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_96 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_97 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_98 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_99 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_100 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_101 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_102 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_103 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_104 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_105 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_106 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_107 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_108 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_109 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_110 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_111 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_112 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_113 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_114 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_115 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_116 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_117 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_118 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_119 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_120 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_121 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_122 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_123 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_124 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_125 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_126 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_127 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_128 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_129 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_130 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_131 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_132 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_133 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_134 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_135 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_136 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_137 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_138 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_139 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_140 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_141 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_142 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_143 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_144 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_145 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_146 | 1.0 | 0.0 | 1.0 |
| OFLOJGLJ_147 | 0.0 | 1.0 | 0.0 |
| OFLOJGLJ_148 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OFLOJGLJ_58 | 29402 | 35580 | False | Myoviridae | VOG7341, VOG1309, VOG0186, VOG9438, VOG4566, VOG0189, VOG5133, VOG4552 |
| OFLOJGLJ_60 | 66019 | 94264 | True | Siphoviridae | VOG1844, VOG0350, VOG9671, VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG3480, VOG0052 |
| OFLOJGLJ_63 | 10630 | 20766 | False | Myoviridae / Siphoviridae | VOG0094, VOG5667, VOG5722, VOG5779, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036 |
| OFLOJGLJ_67 | 4310 | 27933 | False | Siphoviridae | VOG7368, VOG4705, VOG4334, VOG4856, VOG9997, VOG3405, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312 |
| OFLOJGLJ_71 | 1728 | 22357 | False | Siphoviridae | VOG3699, VOG7734, VOG0720, VOG4564, VOG6028, VOG5568, VOG3707, VOG4555, VOG4711, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0801, VOG3462, VOG4687, VOG5601, VOG10593 |
| OFLOJGLJ_93 | 6183 | 10752 | False | Siphoviridae | VOG0205, VOG4606, VOG4632, VOG1406 |
| OFLOJGLJ_104 | 28331 | 47365 | False | Siphoviridae | VOG5601, VOG4687, VOG10972, VOG4619, VOG0801, VOG5793, VOG0701, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691 |
Phigaro v2.4.0 (Database: Jan. 2024 release)