Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCDJFFLN_74 | 11366 | 11169 | CspA | 3.57e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| HCDJFFLN_74 | 11366 | 11169 | CspR | 3.75e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCDJFFLN_1 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_2 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_4 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_5 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_6 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_7 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_8 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_9 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_11 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_12 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_13 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_14 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_15 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_16 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_17 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_18 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_19 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_20 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_21 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_22 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_23 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_24 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_25 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_26 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_27 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_28 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_29 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_30 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_31 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_33 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_44 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_55 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_56 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_57 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_58 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_59 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_60 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_61 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_62 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_63 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_64 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_65 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_66 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_67 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_68 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_69 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_70 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_71 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_72 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_73 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_74 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_75 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_76 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_77 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_78 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_79 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_80 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_81 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_82 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_83 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_84 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_85 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_86 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_87 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_88 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_89 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_90 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_91 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_92 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_93 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_94 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_95 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_96 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_97 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_98 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_99 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_100 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_101 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_102 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_103 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_104 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_105 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_106 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_107 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_108 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_109 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_110 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_111 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_112 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_113 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_114 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_115 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_116 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_117 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_118 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_119 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_120 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_121 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_122 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_123 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_124 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_125 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_126 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_127 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_128 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_129 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_130 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_131 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_132 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_133 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_134 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_135 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_136 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_137 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_138 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_139 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_140 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_141 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_142 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_143 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_144 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_145 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_146 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_147 | 1.0 | 0.0 | 1.0 |
| HCDJFFLN_148 | 0.0 | 1.0 | 0.0 |
| HCDJFFLN_149 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCDJFFLN_66 | 3815 | 16635 | False | Myoviridae | VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235, VOG0189 |
| HCDJFFLN_138 | 4788 | 40068 | False | Siphoviridae | VOG2228, VOG1309, VOG0186, VOG0226, VOG0514, VOG8647, VOG0189, VOG8685, VOG10631, VOG9667, VOG4458, VOG0198, VOG3477, VOG0249, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801, VOG3462, VOG10972, VOG9997 |
Phigaro v2.4.0 (Database: Jan. 2024 release)