Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HKAHPFCC_66 | 90459 | 90653 | CspA | 1.38e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HKAHPFCC_1 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_2 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_3 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_4 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_5 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_6 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_7 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_8 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_9 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_10 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_11 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_12 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_13 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_14 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_15 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_16 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_17 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_18 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_19 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_20 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_21 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_22 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_23 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_24 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_25 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_26 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_27 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_28 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_29 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_30 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_31 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_32 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_33 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_34 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_35 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_36 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_37 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_38 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_39 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_40 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_41 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_42 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_43 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_44 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_45 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_46 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_47 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_48 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_49 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_51 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_53 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_54 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_55 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_57 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_58 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_59 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_60 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_61 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_62 | 1.0 | 0.0 | 1.0 |
| HKAHPFCC_64 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_66 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_77 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_80 | 0.0 | 1.0 | 0.0 |
| HKAHPFCC_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HKAHPFCC_19 | 1230 | 21488 | False | Siphoviridae | VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720, VOG10227 |
| HKAHPFCC_20 | 4536 | 20197 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312 |
| HKAHPFCC_44 | 87844 | 96549 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0198, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)