Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DMNCKHHK_1 | 2099282 | 2100217 | rep28 | 944 / 936 | 81.57 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DMNCKHHK_1 | 0.0 | 1.0 | 0.0 |
| DMNCKHHK_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DMNCKHHK_1 | 6205 | 15573 | False | Myoviridae / Siphoviridae | VOG0384, VOG0205, VOG0226, VOG6085, VOG0025 |
| DMNCKHHK_1 | 445242 | 458892 | True | Siphoviridae | VOG8916, VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG0944, VOG8387, VOG1026 |
| DMNCKHHK_1 | 824195 | 834197 | False | Myoviridae / Siphoviridae | VOG1309, VOG0186, VOG0226, VOG0514, VOG8647, VOG0189, VOG8685, VOG4237, VOG4693, VOG4813, VOG0425, VOG0638, VOG1298, VOG3307 |
| DMNCKHHK_1 | 841416 | 869347 | False | Siphoviridae | VOG3349, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG9880 |
| DMNCKHHK_1 | 967088 | 972641 | True | Unknown | VOG3624, VOG0944, VOG5532, VOG0275 |
| DMNCKHHK_1 | 1400932 | 1407209 | False | Siphoviridae | VOG5088, VOG0198, VOG4799, VOG0226, VOG0186, VOG1309, VOG1309 |
| DMNCKHHK_1 | 1715825 | 1729019 | False | Siphoviridae | VOG0275, VOG0650, VOG4632, VOG4999, VOG8353, VOG1878, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)