Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GKDNICOF_14 | 126 | 797 | rep38 | 678 / 903 | 82.30 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKDNICOF_1 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_2 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_3 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_4 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_5 | 1.0 | 0.0 | 1.0 |
| GKDNICOF_8 | 1.0 | 0.0 | 1.0 |
| GKDNICOF_9 | 1.0 | 0.0 | 1.0 |
| GKDNICOF_10 | 1.0 | 0.0 | 1.0 |
| GKDNICOF_11 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_12 | 1.0 | 0.0 | 1.0 |
| GKDNICOF_13 | 1.0 | 0.0 | 1.0 |
| GKDNICOF_22 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_27 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_28 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_29 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_30 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_31 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_32 | 0.0 | 1.0 | 0.0 |
| GKDNICOF_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKDNICOF_1 | 2381 | 25805 | False | Myoviridae | VOG5087, VOG0861, VOG4705, VOG9945, VOG1900, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG3636, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG4564, VOG0720, VOG4544, VOG10904, VOG0796 |
Phigaro v2.4.0 (Database: Jan. 2024 release)