Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FAONMEAH_15 | 30911 | 30204 | WalR | 2.80e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| FAONMEAH_12 | 36263 | 36460 | CspR | 1.98e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| FAONMEAH_12 | 36263 | 36457 | CspA | 9.67e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FAONMEAH_1 | 1.0 | 0.0 | 1.0 |
| FAONMEAH_2 | 1.0 | 0.0 | 1.0 |
| FAONMEAH_3 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_4 | 1.0 | 0.0 | 1.0 |
| FAONMEAH_5 | 1.0 | 0.0 | 1.0 |
| FAONMEAH_7 | 1.0 | 0.0 | 1.0 |
| FAONMEAH_9 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_10 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_11 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_12 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_13 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_14 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_15 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_16 | 0.0 | 1.0 | 0.0 |
| FAONMEAH_17 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FAONMEAH_9 | 615926 | 633576 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0817, VOG0725, VOG0799, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG1517 |
| FAONMEAH_9 | 641884 | 648219 | False | Siphoviridae | VOG0186, VOG1309, VOG0198, VOG0920, VOG2338, VOG4552, VOG11003, VOG8987, VOG10859, VOG2785, VOG5353 |
Phigaro v2.4.0 (Database: Jan. 2024 release)