Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CILIFOPC_2 | 14564 | 13857 | WalR | 1.54e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CILIFOPC_13 | 98470 | 98273 | CspR | 3.23e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CILIFOPC_13 | 98470 | 98276 | CspA | 1.57e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CILIFOPC_1 | 1.0 | 0.0 | 1.0 |
| CILIFOPC_2 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_3 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_4 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_5 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_6 | 1.0 | 0.0 | 1.0 |
| CILIFOPC_7 | 1.0 | 0.0 | 1.0 |
| CILIFOPC_9 | 1.0 | 0.0 | 1.0 |
| CILIFOPC_11 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_13 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_14 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_15 | 1.0 | 0.0 | 1.0 |
| CILIFOPC_16 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_17 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_18 | 0.0 | 1.0 | 0.0 |
| CILIFOPC_19 | 1.0 | 0.0 | 1.0 |
| CILIFOPC_20 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CILIFOPC_11 | 600313 | 618763 | False | Siphoviridae | VOG4856, VOG3462, VOG0801, VOG6163, VOG0817, VOG0725, VOG0799, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564 |
| CILIFOPC_13 | 116377 | 140958 | False | Siphoviridae | VOG8294, VOG0703, VOG1637, VOG9836, VOG4705, VOG4334, VOG4856, VOG3462, VOG0801, VOG9258, VOG9629, VOG1125, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG4706, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)