Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LHEHFOEM_46104479743WalR4.14e-113transcriptional regulatory protein83.40100.00EPH95667
LHEHFOEM_671408514282CspR3.95e-34cold shock protein89.39100.00AAO82613

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
LHEHFOEM_751956220596rep381046 / 110483.75CP002655

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LHEHFOEM_21.00.01.0
LHEHFOEM_31.00.01.0
LHEHFOEM_41.00.01.0
LHEHFOEM_110.01.00.0
LHEHFOEM_190.01.00.0
LHEHFOEM_250.01.00.0
LHEHFOEM_270.01.00.0
LHEHFOEM_300.01.00.0
LHEHFOEM_320.01.00.0
LHEHFOEM_360.01.00.0
LHEHFOEM_440.01.00.0
LHEHFOEM_460.01.00.0
LHEHFOEM_480.01.00.0
LHEHFOEM_490.01.00.0
LHEHFOEM_500.01.00.0
LHEHFOEM_510.01.00.0
LHEHFOEM_520.01.00.0
LHEHFOEM_530.01.00.0
LHEHFOEM_541.00.01.0
LHEHFOEM_550.01.00.0
LHEHFOEM_560.01.00.0
LHEHFOEM_570.01.00.0
LHEHFOEM_580.01.00.0
LHEHFOEM_590.01.00.0
LHEHFOEM_600.01.00.0
LHEHFOEM_610.01.00.0
LHEHFOEM_620.01.00.0
LHEHFOEM_630.01.00.0
LHEHFOEM_641.00.01.0
LHEHFOEM_650.01.00.0
LHEHFOEM_660.01.00.0
LHEHFOEM_670.01.00.0
LHEHFOEM_680.01.00.0
LHEHFOEM_690.01.00.0
LHEHFOEM_700.01.00.0
LHEHFOEM_710.01.00.0
LHEHFOEM_721.00.01.0
LHEHFOEM_730.01.00.0
LHEHFOEM_740.01.00.0
LHEHFOEM_751.00.01.0
LHEHFOEM_760.01.00.0
LHEHFOEM_770.01.00.0
LHEHFOEM_781.00.01.0
LHEHFOEM_790.01.00.0
LHEHFOEM_801.00.01.0
LHEHFOEM_810.01.00.0
LHEHFOEM_820.01.00.0
LHEHFOEM_830.01.00.0
LHEHFOEM_840.01.00.0
LHEHFOEM_850.01.00.0
LHEHFOEM_860.01.00.0
LHEHFOEM_870.01.00.0
LHEHFOEM_880.01.00.0
LHEHFOEM_890.01.00.0
LHEHFOEM_901.00.01.0
LHEHFOEM_910.01.00.0
LHEHFOEM_920.01.00.0
LHEHFOEM_930.01.00.0
LHEHFOEM_940.01.00.0
LHEHFOEM_950.01.00.0
LHEHFOEM_960.01.00.0
LHEHFOEM_970.01.00.0
LHEHFOEM_980.01.00.0
LHEHFOEM_991.00.01.0
LHEHFOEM_1000.01.00.0
LHEHFOEM_1010.01.00.0
LHEHFOEM_1021.00.01.0
LHEHFOEM_1030.01.00.0
LHEHFOEM_1040.01.00.0
LHEHFOEM_1051.00.01.0
LHEHFOEM_1060.01.00.0
LHEHFOEM_1070.01.00.0
LHEHFOEM_1080.01.00.0
LHEHFOEM_1091.00.01.0
LHEHFOEM_1101.00.01.0
LHEHFOEM_1110.01.00.0
LHEHFOEM_1121.00.01.0
LHEHFOEM_1140.01.00.0
LHEHFOEM_1150.01.00.0
LHEHFOEM_1160.01.00.0
LHEHFOEM_1171.00.01.0
LHEHFOEM_1180.01.00.0
LHEHFOEM_1190.01.00.0
LHEHFOEM_1201.00.01.0
LHEHFOEM_1211.00.01.0
LHEHFOEM_1221.00.01.0
LHEHFOEM_1231.00.01.0
LHEHFOEM_1241.00.01.0
LHEHFOEM_1250.01.00.0
LHEHFOEM_1260.01.00.0
LHEHFOEM_1271.00.01.0
LHEHFOEM_1281.00.01.0
LHEHFOEM_1290.01.00.0
LHEHFOEM_1301.00.01.0
LHEHFOEM_1311.00.01.0
LHEHFOEM_1321.00.01.0
LHEHFOEM_1331.00.01.0
LHEHFOEM_1340.01.00.0
LHEHFOEM_1351.00.01.0
LHEHFOEM_1360.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LHEHFOEM_254632871246FalseSiphoviridaeVOG4649, VOG0703, VOG0054, VOG7888, VOG5008, VOG4828, VOG4633, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6947, VOG4549, VOG4570
LHEHFOEM_49174789183623FalseSiphoviridaeVOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556
LHEHFOEM_52749143964FalseSiphoviridaeVOG4605, VOG0249, VOG4918, VOG0054, VOG7888, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG1300, VOG5616, VOG1345, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG0102, VOG3643, VOG9741, VOG0536, VOG9860, VOG0189, VOG4566, VOG0186, VOG1309, VOG8241
LHEHFOEM_1145289419FalseSiphoviridaeVOG4567, VOG0536, VOG9860, VOG6237, VOG0189, VOG4566, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG10059, VOG5353

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements