Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CFHKIIEO_52 | 200053 | 199349 | WalR | 3.21e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CFHKIIEO_47 | 372 | 569 | CspR | 1.59e-37 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CFHKIIEO_38 | 5069 | 6127 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFHKIIEO_1 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_7 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_8 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_9 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_10 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_11 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_12 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_13 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_14 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_15 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_16 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_17 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_18 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_19 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_20 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_21 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_22 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_24 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_25 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_26 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_27 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_28 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_29 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_30 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_32 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_33 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_35 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_37 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_38 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_39 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_40 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_41 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_44 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_46 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_48 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_49 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_50 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_52 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_53 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_54 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_55 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_56 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_57 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_59 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_60 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_61 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_65 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_67 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_69 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_70 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_71 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_72 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_73 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_74 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_75 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_76 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_77 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_78 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_79 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_80 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_81 | 0.0 | 1.0 | 0.0 |
| CFHKIIEO_83 | 1.0 | 0.0 | 1.0 |
| CFHKIIEO_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFHKIIEO_32 | 3169 | 28820 | False | Siphoviridae | VOG0152, VOG6470, VOG3643, VOG9281, VOG0198, VOG6579, VOG4570, VOG3699, VOG4544, VOG0720, VOG4564, VOG1300, VOG1183, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG3636, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)