Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMHMHKIO_22 | 63370 | 62666 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CMHMHKIO_16 | 16815 | 17012 | CspR | 4.92e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMHMHKIO_1 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_2 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_3 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_4 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_5 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_6 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_7 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_8 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_9 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_10 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_11 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_12 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_13 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_14 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_15 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_16 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_17 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_18 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_19 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_20 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_21 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_22 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_23 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_24 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_26 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_28 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_33 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_38 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_39 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_40 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_41 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_42 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_43 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_44 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_45 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_46 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_47 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_48 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_49 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_50 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_51 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_52 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_53 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_55 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_56 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_57 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_58 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_59 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_60 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_61 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_62 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_63 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_64 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_66 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_67 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_68 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_69 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_70 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_71 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_72 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_73 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_74 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_75 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_76 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_77 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_78 | 1.0 | 0.0 | 1.0 |
| CMHMHKIO_83 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_91 | 0.0 | 1.0 | 0.0 |
| CMHMHKIO_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMHMHKIO_2 | 76579 | 88725 | False | Siphoviridae | VOG3304, VOG0862, VOG8520, VOG10059, VOG0181, VOG10867, VOG6450, VOG4967, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5998, VOG6795, VOG5562 |
| CMHMHKIO_17 | 19313 | 29444 | False | Siphoviridae | VOG4602, VOG6495, VOG5353, VOG4552, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG7363, VOG5998, VOG5562, VOG4693 |
| CMHMHKIO_22 | 129306 | 140055 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| CMHMHKIO_63 | 155447 | 156193 | False | Unknown |
Phigaro v2.4.0 (Database: Jan. 2024 release)