Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NKBDGHDK_42 | 6342 | 5638 | WalR | 4.24e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NKBDGHDK_81 | 13817 | 14014 | CspR | 5.45e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NKBDGHDK_104 | 2278 | 3339 | repUS74 | 1063 / 1062 | 93.41 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NKBDGHDK_1 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_2 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_3 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_4 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_5 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_6 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_7 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_8 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_9 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_10 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_11 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_13 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_14 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_15 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_16 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_17 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_21 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_30 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_33 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_35 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_42 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_45 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_50 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_51 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_52 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_53 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_54 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_55 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_56 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_57 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_58 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_59 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_60 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_61 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_62 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_63 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_64 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_65 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_66 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_67 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_68 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_69 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_70 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_71 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_72 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_73 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_74 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_75 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_76 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_77 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_78 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_79 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_80 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_81 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_82 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_83 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_84 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_85 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_86 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_87 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_88 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_89 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_90 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_91 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_92 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_93 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_94 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_95 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_96 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_97 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_98 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_99 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_100 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_101 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_102 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_103 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_104 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_105 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_106 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_107 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_108 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_109 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_110 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_111 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_113 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_114 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_115 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_116 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_117 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_118 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_119 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_120 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_121 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_122 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_123 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_124 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_125 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_126 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_127 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_128 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_129 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_130 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_131 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_132 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_133 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_135 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_136 | 0.0 | 1.0 | 0.0 |
| NKBDGHDK_137 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_138 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_139 | 1.0 | 0.0 | 1.0 |
| NKBDGHDK_140 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NKBDGHDK_64 | 5489 | 40073 | False | Siphoviridae | VOG10059, VOG6428, VOG0181, VOG10867, VOG4799, VOG0025, VOG7735, VOG4693, VOG9741, VOG0152, VOG3643, VOG0044, VOG1563, VOG0198, VOG4570, VOG4549, VOG1345, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG4605, VOG4599, VOG6455, VOG1637, VOG0703, VOG4918 |
| NKBDGHDK_64 | 57902 | 87865 | False | Siphoviridae | VOG9762, VOG3304, VOG0862, VOG5353, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG4900, VOG5998, VOG5562, VOG4673, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)