Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FHCBODMI_29 | 29999 | 29295 | WalR | 1.50e-111 | transcriptional regulatory protein | 82.98 | 100.00 | EPH95667 |
| FHCBODMI_11 | 213925 | 214122 | CspR | 4.61e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FHCBODMI_1 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_2 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_3 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_4 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_5 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_6 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_7 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_8 | 1.0 | 0.0 | 1.0 |
| FHCBODMI_9 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_10 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_11 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_12 | 1.0 | 0.0 | 1.0 |
| FHCBODMI_14 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_21 | 1.0 | 0.0 | 1.0 |
| FHCBODMI_22 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_23 | 1.0 | 0.0 | 1.0 |
| FHCBODMI_24 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_25 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_26 | 1.0 | 0.0 | 1.0 |
| FHCBODMI_27 | 1.0 | 0.0 | 1.0 |
| FHCBODMI_28 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_29 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_33 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_36 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_37 | 0.0 | 1.0 | 0.0 |
| FHCBODMI_39 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FHCBODMI_6 | 1729 | 14257 | False | Siphoviridae | VOG0002, VOG6914, VOG2215, VOG4995, VOG4552, VOG0549, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG7018, VOG0536, VOG0195, VOG2820, VOG0634, VOG3307, VOG3643, VOG0044 |
| FHCBODMI_6 | 20913 | 40422 | False | Siphoviridae | VOG2786, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4633, VOG4828, VOG4683, VOG4025 |
Phigaro v2.4.0 (Database: Jan. 2024 release)