Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LMNHBCNF_32 | 124296 | 123592 | WalR | 1.95e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LMNHBCNF_20 | 9109 | 9306 | CspR | 3.24e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LMNHBCNF_7 | 32040 | 33101 | repUS74 | 1064 / 1062 | 92.01 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMNHBCNF_1 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_2 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_3 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_4 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_5 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_6 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_7 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_8 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_9 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_10 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_11 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_12 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_13 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_14 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_15 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_16 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_17 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_18 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_19 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_20 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_21 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_22 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_23 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_24 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_25 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_26 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_27 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_28 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_30 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_32 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_33 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_34 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_35 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_36 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_37 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_38 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_39 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_40 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_41 | 1.0 | 0.0 | 1.0 |
| LMNHBCNF_43 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_50 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_51 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_52 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_54 | 0.0 | 1.0 | 0.0 |
| LMNHBCNF_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMNHBCNF_15 | 213 | 32827 | False | Siphoviridae | VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG3643, VOG0152, VOG9741, VOG0536, VOG9860, VOG11003, VOG8987, VOG1638, VOG6238, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)