Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FLJJJCGI_27 | 263290 | 262586 | WalR | 6.44e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| FLJJJCGI_34 | 252435 | 252632 | CspR | 1.47e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FLJJJCGI_18 | 5701 | 6759 | repUS75 | 1059 / 1059 | 96.51 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FLJJJCGI_1 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_2 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_3 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_9 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_10 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_11 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_12 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_13 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_14 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_15 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_16 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_17 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_18 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_19 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_20 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_21 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_22 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_23 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_24 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_25 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_26 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_27 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_28 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_30 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_31 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_32 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_33 | 1.0 | 0.0 | 1.0 |
| FLJJJCGI_34 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_40 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_41 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_42 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_44 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_45 | 0.0 | 1.0 | 0.0 |
| FLJJJCGI_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FLJJJCGI_16 | 15724 | 25098 | True | Unknown | VOG0275, VOG7537, VOG4585, VOG0275 |
| FLJJJCGI_17 | 7868 | 25690 | False | Siphoviridae | VOG0685, VOG4566, VOG0189, VOG7018, VOG9860, VOG0536, VOG4567, VOG0195, VOG0275, VOG4643, VOG0152, VOG3643, VOG6815, VOG0198, VOG7136, VOG4643, VOG0724, VOG0799, VOG0725, VOG0800 |
| FLJJJCGI_34 | 169561 | 179808 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)