Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDANAJPN_50 | 118308 | 117604 | WalR | 9.61e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PDANAJPN_10 | 56006 | 56203 | CspR | 8.88e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PDANAJPN_1 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_2 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_3 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_4 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_5 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_6 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_7 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_8 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_9 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_10 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_11 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_12 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_13 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_14 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_15 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_16 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_17 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_18 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_19 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_20 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_21 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_22 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_23 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_24 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_25 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_26 | 1.0 | 0.0 | 1.0 |
| PDANAJPN_27 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_28 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_29 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_30 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_31 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_32 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_33 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_34 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_35 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_36 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_38 | 1.0 | 0.0 | 1.0 |
| PDANAJPN_39 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_41 | 1.0 | 0.0 | 1.0 |
| PDANAJPN_42 | 1.0 | 0.0 | 1.0 |
| PDANAJPN_43 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_50 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_51 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_53 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_58 | 0.0 | 1.0 | 0.0 |
| PDANAJPN_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PDANAJPN_1 | 37416 | 47534 | True | Siphoviridae | VOG4799, VOG0189, VOG0982, VOG5280, VOG5317, VOG3307, VOG0198, VOG5088, VOG5088, VOG4570, VOG4570, VOG4549 |
| PDANAJPN_2 | 3051 | 42739 | False | Siphoviridae | VOG0862, VOG8520, VOG5353, VOG6450, VOG0181, VOG10867, VOG4967, VOG3642, VOG0685, VOG0283, VOG0514, VOG0226, VOG4566, VOG0189, VOG6237, VOG9860, VOG0536, VOG9741, VOG0152, VOG3643, VOG9671, VOG0198, VOG4570, VOG5821, VOG4549, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG0861, VOG7017, VOG0703, VOG4649 |
| PDANAJPN_8 | 31730 | 41327 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| PDANAJPN_19 | 2423 | 34607 | False | Siphoviridae | VOG7888, VOG4599, VOG4605, VOG4705, VOG0701, VOG10044, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG1300, VOG5616, VOG0692, VOG0691, VOG4544, VOG3699, VOG1345, VOG4549, VOG4570, VOG0198, VOG1563, VOG0044, VOG0102, VOG2820, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566 |
| PDANAJPN_20 | 15237 | 35424 | False | Siphoviridae | VOG6495, VOG4918, VOG0703, VOG0753, VOG7896, VOG6455, VOG10016, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)