Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPMAKFCF_58 | 2559 | 3209 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 94.91 | 100.00 | AB080798.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OPMAKFCF_58 | 2559 | 3209 | cat(pC194) | Chloramphenicol | 100.00 | 100.00 | NC_002013 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPMAKFCF_58 | 2562 | 3209 | catA | type A-9 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_001010387.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPMAKFCF_86 | 44545 | 43841 | WalR | 4.93e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| OPMAKFCF_34 | 619 | 813 | CspR | 1.05e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OPMAKFCF_34 | 619 | 816 | CspA | 1.62e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OPMAKFCF_1 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_2 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_3 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_4 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_5 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_6 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_7 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_8 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_9 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_10 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_11 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_12 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_13 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_14 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_15 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_16 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_17 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_18 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_19 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_20 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_21 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_22 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_23 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_24 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_25 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_26 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_27 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_28 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_29 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_30 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_31 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_32 | 1.0 | 0.0 | 1.0 |
| OPMAKFCF_33 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_34 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_35 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_36 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_37 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_38 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_39 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_40 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_41 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_42 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_43 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_44 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_45 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_46 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_47 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_48 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_49 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_50 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_51 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_52 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_53 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_54 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_55 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_56 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_57 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_58 | 1.0 | 0.0 | 1.0 |
| OPMAKFCF_59 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_60 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_61 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_62 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_63 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_64 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_65 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_66 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_67 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_68 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_69 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_70 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_71 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_72 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_73 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_74 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_75 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_76 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_77 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_78 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_79 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_80 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_81 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_82 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_83 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_84 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_85 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_86 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_87 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_88 | 1.0 | 0.0 | 1.0 |
| OPMAKFCF_89 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_90 | 1.0 | 0.0 | 1.0 |
| OPMAKFCF_91 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_92 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_93 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_94 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_95 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_96 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_97 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_98 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_99 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_100 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_101 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_102 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_103 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_104 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_105 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_106 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_107 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_108 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_109 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_110 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_111 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_112 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_113 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_114 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_115 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_116 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_117 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_118 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_119 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_120 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_121 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_122 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_123 | 1.0 | 0.0 | 1.0 |
| OPMAKFCF_124 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_125 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_126 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_127 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_128 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_129 | 1.0 | 0.0 | 1.0 |
| OPMAKFCF_130 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_131 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_132 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_133 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_134 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_135 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_136 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_137 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_138 | 0.0 | 1.0 | 0.0 |
| OPMAKFCF_139 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OPMAKFCF_2 | 2419 | 24512 | False | Siphoviridae | VOG5878, VOG0198, VOG1183, VOG9846, VOG0796, VOG4544, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG7548, VOG9998 |
| OPMAKFCF_62 | 5063 | 16430 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| OPMAKFCF_96 | 96330 | 121397 | False | Siphoviridae | VOG0044, VOG3643, VOG1049, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)