Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HBCFODLC_65 | 1 | 412 | cat(pC194) | Chloramphenicol | 100.00 | 63.29 | NC_002013 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBCFODLC_65 | 2 | 409 | catA | type A-9 chloramphenicol O-acetyltransferase | PARTIAL_CONTIG_ENDX | 100.00 | 62.96 | WP_001010387.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBCFODLC_63 | 160422 | 159718 | WalR | 1.32e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| HBCFODLC_49 | 46098 | 45904 | CspR | 2.35e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HBCFODLC_49 | 46098 | 45901 | CspA | 3.61e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBCFODLC_1 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_2 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_3 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_4 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_5 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_6 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_7 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_8 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_9 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_10 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_11 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_12 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_13 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_14 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_15 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_16 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_17 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_18 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_19 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_20 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_21 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_22 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_23 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_24 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_25 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_26 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_27 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_28 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_29 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_30 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_31 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_32 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_33 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_34 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_35 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_36 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_37 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_38 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_39 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_40 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_41 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_42 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_43 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_45 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_46 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_47 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_48 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_49 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_50 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_51 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_52 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_53 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_54 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_55 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_56 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_57 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_58 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_59 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_60 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_61 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_62 | 1.0 | 0.0 | 1.0 |
| HBCFODLC_63 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_64 | 0.0 | 1.0 | 0.0 |
| HBCFODLC_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HBCFODLC_10 | 2877 | 27968 | False | Siphoviridae | VOG3643, VOG1049, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054, VOG0713 |
| HBCFODLC_21 | 2660 | 22351 | False | Siphoviridae | VOG9998, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG4544, VOG0796 |
| HBCFODLC_36 | 4634 | 22060 | False | Siphoviridae | VOG0181, VOG6495, VOG6495, VOG4602, VOG1648, VOG0083, VOG4694, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)