Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MEBHALAA_2 | 47076 | 47726 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 94.91 | 100.00 | AB080798.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MEBHALAA_2 | 47076 | 47726 | cat(pC194) | Chloramphenicol | 100.00 | 100.00 | NC_002013 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MEBHALAA_2 | 47076 | 47723 | catA | type A-9 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_001010387.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MEBHALAA_3 | 234840 | 235544 | WalR | 2.68e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| MEBHALAA_26 | 46109 | 45915 | CspR | 5.51e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MEBHALAA_26 | 46109 | 45912 | CspA | 8.45e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MEBHALAA_1 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_2 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_3 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_4 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_6 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_7 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_8 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_9 | 1.0 | 0.0 | 1.0 |
| MEBHALAA_10 | 1.0 | 0.0 | 1.0 |
| MEBHALAA_11 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_12 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_13 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_14 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_15 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_16 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_17 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_18 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_19 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_20 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_21 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_22 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_23 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_24 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_25 | 0.0 | 1.0 | 0.0 |
| MEBHALAA_26 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MEBHALAA_1 | 143619 | 167306 | False | Siphoviridae | VOG1637, VOG8294, VOG9998, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG4544, VOG0796, VOG9846, VOG1183, VOG0198 |
| MEBHALAA_6 | 211484 | 236575 | False | Siphoviridae | VOG0322, VOG0713, VOG0054, VOG1637, VOG8294, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG3381, VOG0198, VOG1049 |
| MEBHALAA_15 | 80175 | 99941 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG4694, VOG0083, VOG1648, VOG4602, VOG6495, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)