Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPMMDIKB_14 | 107217 | 107867 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 94.91 | 100.00 | AB080798.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPMMDIKB_14 | 107217 | 107867 | cat(pC194) | Chloramphenicol | 100.00 | 100.00 | NC_002013 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPMMDIKB_14 | 107220 | 107867 | catA | type A-9 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_001010387.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPMMDIKB_29 | 160087 | 159383 | WalR | 2.68e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| CPMMDIKB_13 | 46098 | 45904 | CspR | 2.27e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CPMMDIKB_13 | 46098 | 45901 | CspA | 3.49e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPMMDIKB_1 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_2 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_3 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_4 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_5 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_6 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_7 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_8 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_9 | 1.0 | 0.0 | 1.0 |
| CPMMDIKB_10 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_11 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_12 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_13 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_14 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_15 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_16 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_17 | 1.0 | 0.0 | 1.0 |
| CPMMDIKB_19 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_20 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_21 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_22 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_23 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_24 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_25 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_26 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_27 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_28 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_29 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_30 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_31 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_32 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_33 | 0.0 | 1.0 | 0.0 |
| CPMMDIKB_34 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPMMDIKB_5 | 2301 | 27392 | False | Siphoviridae | VOG3643, VOG1049, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054, VOG0713 |
| CPMMDIKB_16 | 4634 | 24400 | False | Siphoviridae | VOG0181, VOG6495, VOG6495, VOG4602, VOG1648, VOG0083, VOG4694, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| CPMMDIKB_22 | 3162 | 25255 | False | Siphoviridae | VOG9998, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG4544, VOG0796, VOG9846, VOG1183, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)